Cow genome map

Conread name: Ss1.1-rcov33b_m10.5

Conread position: 264-397
Cow position: chr29:396463-396595 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 37, 61

Conread position: 264-397
Cow position: chr29:10838998-10839132 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 37, 0

Conread position: 265-397
Cow position: chr29:8841387-8841256 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 38, 72

Conread position: 265-397
Cow position: chr29:11887326-11887454 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 265-408
Cow position: chr29:19762326-19762466 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 42, 89

Conread position: 266-420
Cow position: chr29:34483570-34483412 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 6, 139

Conread position: 267-382
Cow position: chr29:28257201-28257320 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 267-385
Cow position: chr29:22723661-22723777 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 34, 105

Conread position: 267-385
Cow position: chr29:23825150-23825031 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 101
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 34, 0

Conread position: 267-395
Cow position: chr29:41112821-41112699 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 34, 57

Conread position: 267-396
Cow position: chr29:1011529-1011401 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 109
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 62, 32

Conread position: 267-397
Cow position: chr29:2071144-2071003 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 267-397
Cow position: chr29:4441144-4441012 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 36, 19

Conread position: 267-397
Cow position: chr29:5520425-5520291 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 267-397
Cow position: chr29:6636140-6636271 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 88, 26

Conread position: 267-397
Cow position: chr29:9378697-9378828 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 34, 0

Conread position: 267-397
Cow position: chr29:10994572-10994704 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 34, 0

Conread position: 267-397
Cow position: chr29:17110017-17110146 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 40, 108

Conread position: 267-397
Cow position: chr29:19187086-19187219 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 267-397
Cow position: chr29:19949367-19949498 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 267-397
Cow position: chr29:24604956-24605089 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 267-397
Cow position: chr29:26540480-26540347 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 267-397
Cow position: chr29:36781244-36781117 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 34, 58

Conread position: 267-397
Cow position: chr29:40117631-40117758 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 34, 58

Conread position: 267-398
Cow position: chr29:36357186-36357322 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 115
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 34, 0

Conread position: 267-400
Cow position: chr29:31929047-31929182 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 112
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 34, 79

Conread position: 267-402
Cow position: chr29:3293008-3293142 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 132, 56

Conread position: 267-402
Cow position: chr29:30440997-30441137 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 35, 16

Conread position: 267-406
Cow position: chr29:17804594-17804733 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 40, 57

Conread position: 267-407
Cow position: chr29:42363955-42363816 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 104
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 267-408
Cow position: chr29:2219447-2219591 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 34, 0

Conread position: 267-408
Cow position: chr29:4120914-4121063 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 267-408
Cow position: chr29:10191978-10191842 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 40, 73

Conread position: 267-408
Cow position: chr29:24660745-24660881 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 34, 43

Conread position: 267-409
Cow position: chr29:17297196-17297341 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 40, 137

Conread position: 267-412
Cow position: chr29:19363770-19363913 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 34, 133

Conread position: 267-412
Cow position: chr29:22613490-22613628 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 267-412
Cow position: chr29:27042332-27042477 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 36, 107

Conread position: 267-412
Cow position: chr29:33143294-33143151 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 34, 130

Conread position: 267-412
Cow position: chr29:41530910-41531057 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 47, 136

Conread position: 267-416
Cow position: chr29:29296454-29296600 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 34, 57

Conread position: 267-419
Cow position: chr29:37293096-37293242 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 34, 53

Conread position: 267-420
Cow position: chr29:11685227-11685384 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 36, 131

Conread position: 267-420
Cow position: chr29:34359761-34359611 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 36, 62

Conread position: 267-421
Cow position: chr29:25432513-25432670 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 36, 99

Conread position: 267-429
Cow position: chr29:16200418-16200254 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 36, 137

Conread position: 267-430
Cow position: chr29:19176849-19176690 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 26, 68

Conread position: 267-435
Cow position: chr29:35677483-35677309 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 35, 137

Conread position: 267-436
Cow position: chr29:14576919-14577087 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 36, 130

Conread position: 267-436
Cow position: chr29:32656030-32655864 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 35, 65

Conread position: 267-442
Cow position: chr29:44985332-44985498 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 34, 8

Conread position: 267-460
Cow position: chr29:15947227-15947421 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 147
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 36, 135

Conread position: 267-465
Cow position: chr29:32894323-32894513 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 33, 56

Conread position: 268-397
Cow position: chr29:32215769-32215897 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 33, 55

Conread position: 268-407
Cow position: chr29:9310661-9310806 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 33, 0

Conread position: 268-407
Cow position: chr29:22729628-22729767 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 39, 130

Conread position: 268-409
Cow position: chr29:43088369-43088510 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 33, 129

Conread position: 268-425
Cow position: chr29:501258-501417 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 35, 98

Conread position: 268-428
Cow position: chr29:4070685-4070846 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 33, 65

Conread position: 269-394
Cow position: chr29:38010507-38010634 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 269-397
Cow position: chr29:7040810-7040675 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 269-407
Cow position: chr29:22991357-22991495 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 32, 54

Conread position: 270-392
Cow position: chr29:39111249-39111136 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 101
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 271-392
Cow position: chr29:40791367-40791485 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 30, 61

Conread position: 271-405
Cow position: chr29:13063923-13064051 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 30, 54

Conread position: 271-407
Cow position: chr29:936271-936409 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 30, 54

Conread position: 271-411
Cow position: chr29:16279051-16279184 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 272-397
Cow position: chr29:9709760-9709886 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 29, 51

Conread position: 272-397
Cow position: chr29:21645374-21645510 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 112
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 29, 0

Conread position: 272-420
Cow position: chr29:8634719-8634868 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 29, 81

Conread position: 272-421
Cow position: chr29:16657761-16657905 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 273-390
Cow position: chr29:7143361-7143485 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 276-397
Cow position: chr29:22720574-22720454 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 31, 48

Conread position: 276-408
Cow position: chr29:4023067-4023198 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 25, 121

Conread position: 276-408
Cow position: chr29:26017433-26017297 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 26, 121

Conread position: 276-413
Cow position: chr29:10203841-10203977 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 29, 44

Conread position: 276-414
Cow position: chr29:14746849-14746986 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 27, 124

Conread position: 276-414
Cow position: chr29:38754868-38754726 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 276-420
Cow position: chr29:32656502-32656650 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 8, 127

Conread position: 277-417
Cow position: chr29:10658446-10658305 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 25, 0

Conread position: 280-408
Cow position: chr29:659355-659484 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 21, 119

Conread position: 280-412
Cow position: chr29:27683888-27683757 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 99, 0

Conread position: 285-425
Cow position: chr29:4741313-4741172 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 18, 119

Conread position: 286-408
Cow position: chr29:23874539-23874665 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 112

Conread position: 298-421
Cow position: chr29:31835364-31835487 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 100, 33

Conread position: 300-431
Cow position: chr29:7452335-7452465 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 38, 101

Conread position: 338-414
Cow position: chr29:13646380-13646304 (view UCSC Genome Browser custom track)
Alignm length: 77
Alignm identity: 70
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.