Cow genome map

Conread name: Ss1.1-rcte22_m17.5

Conread position: 46-355
Cow position: chr1:79844373-79844676 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 215
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 233, 20

Conread position: 50-351
Cow position: chr1:58754888-58754605 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 217
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 77, 69

Conread position: 51-372
Cow position: chr1:63434897-63434585 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 208
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 74, 0

Conread position: 52-382
Cow position: chr1:50931066-50930758 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 218
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 65, 23

Conread position: 53-294
Cow position: chr1:47233570-47233339 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 177
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 13, 60

Conread position: 54-351
Cow position: chr1:56618739-56618463 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 218
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 141, 0

Conread position: 54-373
Cow position: chr1:69678418-69678108 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 225
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 11, 121

Conread position: 57-203
Cow position: chr1:85647867-85647720 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 73, 0

Conread position: 57-274
Cow position: chr1:88652545-88652754 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 62, 39

Conread position: 57-349
Cow position: chr1:17196715-17196434 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 210
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 71, 63

Conread position: 57-349
Cow position: chr1:43389135-43388863 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 212
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 63, 17

Conread position: 57-351
Cow position: chr1:6941378-6941659 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 190
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 57-355
Cow position: chr1:57575844-57575567 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 213
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 40, 0

Conread position: 57-356
Cow position: chr1:93528613-93528891 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 203
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 113, 0

Conread position: 57-364
Cow position: chr1:81613304-81613599 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 209
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 60, 43

Conread position: 57-373
Cow position: chr1:81569116-81568811 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 229
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 56, 44

Conread position: 57-373
Cow position: chr1:90621594-90621287 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 229
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 13, 39

Conread position: 57-379
Cow position: chr1:89510008-89509707 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 228
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 60, 40

Conread position: 57-384
Cow position: chr1:92369647-92369975 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 224
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 66, 168

Conread position: 57-385
Cow position: chr1:41696973-41697280 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 227
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 276, 62

Conread position: 58-186
Cow position: chr1:20204944-20205073 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 55, 40

Conread position: 59-355
Cow position: chr1:22525791-22526071 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 203
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 6, 115

Conread position: 61-203
Cow position: chr1:8129052-8128908 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 58, 73

Conread position: 61-203
Cow position: chr1:80900036-80900180 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 61-203
Cow position: chr1:87440387-87440528 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 65, 17

Conread position: 61-275
Cow position: chr1:65028450-65028651 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 58, 136

Conread position: 61-275
Cow position: chr1:89349881-89350084 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 59, 136

Conread position: 61-288
Cow position: chr1:84255682-84255900 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 56, 136

Conread position: 61-291
Cow position: chr1:67688661-67688451 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 169
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 23, 70

Conread position: 61-294
Cow position: chr1:57900821-57900585 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 108, 51

Conread position: 61-294
Cow position: chr1:98551635-98551858 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 173
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 59, 121

Conread position: 61-350
Cow position: chr1:55705331-55705055 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 211
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 56, 129

Conread position: 61-354
Cow position: chr1:71079039-71078766 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 216
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 47, 0

Conread position: 61-355
Cow position: chr1:1981196-1980913 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 212
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 65, 139

Conread position: 61-355
Cow position: chr1:24133140-24132866 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 208
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 36, 0

Conread position: 61-355
Cow position: chr1:43505443-43505721 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 218
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 56, 139

Conread position: 61-355
Cow position: chr1:48105515-48105228 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 201
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 59, 96

Conread position: 61-355
Cow position: chr1:81290426-81290701 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 221
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 58, 23

Conread position: 61-355
Cow position: chr1:101860570-101860290 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 204
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 36, 23

Conread position: 61-370
Cow position: chr1:89448816-89449110 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 220
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 66, 141

Conread position: 61-372
Cow position: chr1:86110812-86110529 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 224
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 296, 49

Conread position: 61-373
Cow position: chr1:68817880-68817586 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 223
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 57, 116

Conread position: 61-373
Cow position: chr1:78857403-78857109 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 222
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 221, 45

Conread position: 61-374
Cow position: chr1:69551567-69551267 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 207
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 66, 138

Conread position: 61-375
Cow position: chr1:71295387-71295082 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 223
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 64, 36

Conread position: 61-383
Cow position: chr1:25383582-25383896 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 233
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 49, 94

Conread position: 61-387
Cow position: chr1:88913237-88913553 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 227
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 55, 140

Conread position: 61-389
Cow position: chr1:86682643-86682329 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 234
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 68, 128

Conread position: 61-391
Cow position: chr1:82884471-82884138 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 225
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 180, 49

Conread position: 63-269
Cow position: chr1:52467222-52467416 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 65, 126

Conread position: 64-158
Cow position: chr1:94404134-94404229 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 81
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 64-203
Cow position: chr1:61560805-61560663 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 64-368
Cow position: chr1:62964199-62964479 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 205
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 293, 27

Conread position: 64-373
Cow position: chr1:5479760-5479443 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 201
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 26, 193

Conread position: 64-373
Cow position: chr1:42175646-42175945 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 231
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 148, 47

Conread position: 66-355
Cow position: chr1:261561-261267 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 209
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 54, 127

Conread position: 67-202
Cow position: chr1:41695524-41695660 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 58, 132

Conread position: 67-278
Cow position: chr1:74822374-74822573 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 67-355
Cow position: chr1:89388262-89388540 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 207
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 60, 138

Conread position: 67-368
Cow position: chr1:41056601-41056891 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 220
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 60, 131

Conread position: 67-371
Cow position: chr1:12464741-12464452 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 212
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 50, 131

Conread position: 67-373
Cow position: chr1:77232649-77232357 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 218
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 210, 52

Conread position: 67-374
Cow position: chr1:42887342-42887064 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 218
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 44, 0

Conread position: 68-389
Cow position: chr1:84812017-84811709 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 233
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 48, 130

Conread position: 69-380
Cow position: chr1:61884840-61885136 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 218
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 288, 17

Conread position: 71-355
Cow position: chr1:70828828-70829093 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 206
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 55, 113

Conread position: 74-372
Cow position: chr1:197076-196791 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 209
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 39, 54

Conread position: 76-291
Cow position: chr1:52039566-52039770 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 164
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 39, 117

Conread position: 77-355
Cow position: chr1:95072264-95072540 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 198
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 43, 120

Conread position: 77-363
Cow position: chr1:54267999-54267736 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 209
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 26, 0

Conread position: 85-335
Cow position: chr1:87197758-87197997 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 189
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 31, 114

Conread position: 85-373
Cow position: chr1:5597267-5596992 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 205
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 39, 77

Conread position: 85-374
Cow position: chr1:79003916-79004189 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 205
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 42, 112

Conread position: 88-362
Cow position: chr1:81481439-81481181 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 198
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 28, 111

Conread position: 111-386
Cow position: chr1:41027043-41027294 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 196
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 73, 0

Conread position: 118-386
Cow position: chr1:95618617-95618868 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 179
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 127-414
Cow position: chr1:45315652-45315372 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 204
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 150, 70

Conread position: 129-354
Cow position: chr1:91743501-91743267 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 165
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 62, 155

Conread position: 129-372
Cow position: chr1:759432-759196 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 177
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 153, 47

Conread position: 152-352
Cow position: chr1:70483325-70483141 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 152-373
Cow position: chr1:55685969-55685761 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 157
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 205, 43

Conread position: 196-350
Cow position: chr1:70416720-70416568 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 83, 0

Conread position: 196-356
Cow position: chr1:10470466-10470620 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 16, 7

Conread position: 198-381
Cow position: chr1:15102925-15103107 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 126
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 84, 0

Conread position: 211-352
Cow position: chr1:102730707-102730563 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 88, 69

Conread position: 211-355
Cow position: chr1:64811290-64811434 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 211-373
Cow position: chr1:80423677-80423514 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 43, 67

Conread position: 211-374
Cow position: chr1:4329848-4329693 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 77, 0

Conread position: 211-374
Cow position: chr1:90192471-90192637 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 32, 28

Conread position: 211-397
Cow position: chr1:19384401-19384217 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 146, 60

Conread position: 213-351
Cow position: chr1:1799087-1799225 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 213-352
Cow position: chr1:71946027-71945886 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 69, 118

Conread position: 213-355
Cow position: chr1:7965903-7966044 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 71, 0

Conread position: 213-373
Cow position: chr1:50906623-50906463 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 144, 64

Conread position: 213-374
Cow position: chr1:29671167-29671003 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 69, 123

Conread position: 214-405
Cow position: chr1:23101733-23101926 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 142
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 68, 86

Show alignments to all cow chromosomes.