Cow genome map
| Conread name: | Ss1.1-rcte22_m17.5 |
| Conread position: | 43-355 |
| Cow position: | chr10:35731649-35731361 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 52-278 |
| Cow position: | chr10:22633747-22633533 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 72 |
| Conread position: | 54-278 |
| Cow position: | chr10:12100667-12100451 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 35 |
| Conread position: | 54-376 |
| Cow position: | chr10:23506611-23506300 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 12, 138 |
| Conread position: | 56-375 |
| Cow position: | chr10:61510057-61509755 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 234 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 301, 63 |
| Conread position: | 57-172 |
| Cow position: | chr10:29090807-29090686 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 57-275 |
| Cow position: | chr10:37668273-37668067 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 60, 142 |
| Conread position: | 57-297 |
| Cow position: | chr10:6543607-6543837 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 63, 141 |
| Conread position: | 57-342 |
| Cow position: | chr10:52278615-52278875 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 57-349 |
| Cow position: | chr10:33215685-33215953 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 64, 145 |
| Conread position: | 57-355 |
| Cow position: | chr10:20095642-20095934 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 59, 137 |
| Conread position: | 57-355 |
| Cow position: | chr10:27119082-27118796 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 220 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 78, 135 |
| Conread position: | 57-355 |
| Cow position: | chr10:31027761-31027474 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 40 |
| Conread position: | 57-361 |
| Cow position: | chr10:35802484-35802193 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 123, 70 |
| Conread position: | 57-363 |
| Cow position: | chr10:21657308-21657587 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 61, 124 |
| Conread position: | 57-373 |
| Cow position: | chr10:39228030-39228350 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 63, 141 |
| Conread position: | 57-378 |
| Cow position: | chr10:10750368-10750052 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 67, 144 |
| Conread position: | 58-353 |
| Cow position: | chr10:53674710-53674992 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 58, 28 |
| Conread position: | 61-176 |
| Cow position: | chr10:17584151-17584033 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 61-179 |
| Cow position: | chr10:14947150-14947268 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 61-198 |
| Cow position: | chr10:38014254-38014392 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 74, 35 |
| Conread position: | 61-203 |
| Cow position: | chr10:8923166-8923310 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 61-203 |
| Cow position: | chr10:30360407-30360551 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 61-208 |
| Cow position: | chr10:24781076-24781224 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 61-274 |
| Cow position: | chr10:15462378-15462591 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 53, 65 |
| Conread position: | 61-294 |
| Cow position: | chr10:35779013-35778793 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 62, 139 |
| Conread position: | 61-294 |
| Cow position: | chr10:41803006-41802783 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 221, 23 |
| Conread position: | 61-355 |
| Cow position: | chr10:9576149-9575882 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 61-355 |
| Cow position: | chr10:11966954-11966677 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 212 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 59, 14 |
| Conread position: | 61-355 |
| Cow position: | chr10:30523176-30522897 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 55, 137 |
| Conread position: | 61-355 |
| Cow position: | chr10:39124018-39124302 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 232, 24 |
| Conread position: | 61-355 |
| Cow position: | chr10:40164047-40163767 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 60, 136 |
| Conread position: | 61-355 |
| Cow position: | chr10:45370943-45371224 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 59, 122 |
| Conread position: | 61-355 |
| Cow position: | chr10:46327577-46327857 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 66, 141 |
| Conread position: | 61-372 |
| Cow position: | chr10:10148543-10148835 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 180, 59 |
| Conread position: | 61-373 |
| Cow position: | chr10:8449387-8449697 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 13, 137 |
| Conread position: | 61-373 |
| Cow position: | chr10:30352736-30353035 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 58, 121 |
| Conread position: | 61-374 |
| Cow position: | chr10:52695840-52695543 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 227 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 61, 140 |
| Conread position: | 61-378 |
| Cow position: | chr10:8093426-8093134 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 53, 25 |
| Conread position: | 61-383 |
| Cow position: | chr10:2613255-2613561 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 52, 122 |
| Conread position: | 62-193 |
| Cow position: | chr10:29380072-29379938 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 8, 130 |
| Conread position: | 62-408 |
| Cow position: | chr10:6719786-6720120 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 64, 22 |
| Conread position: | 64-355 |
| Cow position: | chr10:24756308-24756575 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 64-368 |
| Cow position: | chr10:22888924-22888636 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 137 |
| Conread position: | 64-372 |
| Cow position: | chr10:6384427-6384711 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 303, 20 |
| Conread position: | 64-386 |
| Cow position: | chr10:1978777-1978469 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 293, 61 |
| Conread position: | 64-404 |
| Cow position: | chr10:66199818-66199488 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 100 |
| Conread position: | 66-203 |
| Cow position: | chr10:1427930-1428068 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 67-261 |
| Cow position: | chr10:41941682-41941489 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 132 |
| Conread position: | 67-355 |
| Cow position: | chr10:52296389-52296663 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 42, 120 |
| Conread position: | 67-373 |
| Cow position: | chr10:5151239-5151537 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 67-395 |
| Cow position: | chr10:37415682-37415983 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 47, 134 |
| Conread position: | 69-177 |
| Cow position: | chr10:22520267-22520157 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 70-373 |
| Cow position: | chr10:4151444-4151743 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 212, 40 |
| Conread position: | 80-373 |
| Cow position: | chr10:23346396-23346119 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 46, 120 |
| Conread position: | 111-355 |
| Cow position: | chr10:49910174-49909926 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 11, 73 |
| Conread position: | 122-352 |
| Cow position: | chr10:60697674-60697465 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-355 |
| Cow position: | chr10:38995178-38995402 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 167, 76 |
| Conread position: | 122-373 |
| Cow position: | chr10:37426184-37425952 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 107, 73 |
| Conread position: | 125-372 |
| Cow position: | chr10:55600204-55599969 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 157, 71 |
| Conread position: | 130-375 |
| Cow position: | chr10:2857006-2857235 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 212, 5 |
| Conread position: | 151-374 |
| Cow position: | chr10:55043664-55043454 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 209-372 |
| Cow position: | chr10:32829255-32829418 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 211-351 |
| Cow position: | chr10:10829067-10829204 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 211-351 |
| Cow position: | chr10:19679123-19679268 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 211-351 |
| Cow position: | chr10:30929859-30929722 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 211-354 |
| Cow position: | chr10:14188585-14188445 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 137, 28 |
| Conread position: | 211-355 |
| Cow position: | chr10:7089372-7089507 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 211-355 |
| Cow position: | chr10:10104806-10104946 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 211-355 |
| Cow position: | chr10:25475558-25475699 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 211-355 |
| Cow position: | chr10:38329668-38329812 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 89, 104 |
| Conread position: | 211-355 |
| Cow position: | chr10:54848803-54848944 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 211-373 |
| Cow position: | chr10:27136663-27136500 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 211-375 |
| Cow position: | chr10:36856106-36855938 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 211-377 |
| Cow position: | chr10:1417622-1417782 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 143, 12 |
| Conread position: | 211-383 |
| Cow position: | chr10:58651164-58651002 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 211-399 |
| Cow position: | chr10:47429851-47430031 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 213-355 |
| Cow position: | chr10:14668425-14668565 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 213-355 |
| Cow position: | chr10:53564093-53563951 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 215-382 |
| Cow position: | chr10:5784225-5784057 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 67, 31 |
| Conread position: | 216-355 |
| Cow position: | chr10:40998887-40999024 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 5, 56 |
Show alignments to all cow chromosomes.