Cow genome map
| Conread name: | Ss1.1-rcte22_m17.5 |
| Conread position: | 29-199 |
| Cow position: | chr11:6154274-6154441 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 94, 41 |
| Conread position: | 43-335 |
| Cow position: | chr11:17493358-17493638 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 75, 12 |
| Conread position: | 48-179 |
| Cow position: | chr11:46580235-46580370 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 48-397 |
| Cow position: | chr11:8437808-8437467 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 244 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 238, 70 |
| Conread position: | 57-187 |
| Cow position: | chr11:16251356-16251223 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 57-203 |
| Cow position: | chr11:67747175-67747321 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 57-276 |
| Cow position: | chr11:23128652-23128444 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 63, 141 |
| Conread position: | 57-277 |
| Cow position: | chr11:44636867-44636656 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 60, 142 |
| Conread position: | 57-284 |
| Cow position: | chr11:35684604-35684396 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 57-284 |
| Cow position: | chr11:47545021-47545238 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 57, 128 |
| Conread position: | 57-294 |
| Cow position: | chr11:25386954-25387183 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 19, 122 |
| Conread position: | 57-294 |
| Cow position: | chr11:30954890-30955114 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 67, 140 |
| Conread position: | 57-352 |
| Cow position: | chr11:35580148-35580433 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 56, 137 |
| Conread position: | 57-352 |
| Cow position: | chr11:49148930-49149218 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 35 |
| Conread position: | 57-352 |
| Cow position: | chr11:52380983-52380700 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 60, 139 |
| Conread position: | 57-355 |
| Cow position: | chr11:27248383-27248663 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 71, 125 |
| Conread position: | 57-355 |
| Cow position: | chr11:65762709-65762410 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 60, 145 |
| Conread position: | 57-381 |
| Cow position: | chr11:45646704-45646396 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 59, 141 |
| Conread position: | 57-387 |
| Cow position: | chr11:17036639-17036329 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 238 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 70, 140 |
| Conread position: | 58-340 |
| Cow position: | chr11:39499249-39499515 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 58-371 |
| Cow position: | chr11:30830724-30830430 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 68, 139 |
| Conread position: | 58-385 |
| Cow position: | chr11:80556112-80556425 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 58, 84 |
| Conread position: | 59-378 |
| Cow position: | chr11:26535667-26535983 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 7, 52 |
| Conread position: | 60-195 |
| Cow position: | chr11:10213672-10213535 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 60-276 |
| Cow position: | chr11:65767091-65767296 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 59, 135 |
| Conread position: | 61-198 |
| Cow position: | chr11:24937558-24937697 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 61-198 |
| Cow position: | chr11:80537380-80537520 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 61-203 |
| Cow position: | chr11:42793078-42792936 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 61-203 |
| Cow position: | chr11:69392452-69392599 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 61-270 |
| Cow position: | chr11:55494574-55494770 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 61-294 |
| Cow position: | chr11:59702381-59702607 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 54, 17 |
| Conread position: | 61-294 |
| Cow position: | chr11:73924667-73924447 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 182, 62 |
| Conread position: | 61-297 |
| Cow position: | chr11:26845700-26845480 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 56, 137 |
| Conread position: | 61-350 |
| Cow position: | chr11:40818743-40818462 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 57, 116 |
| Conread position: | 61-350 |
| Cow position: | chr11:47772498-47772212 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 67, 143 |
| Conread position: | 61-355 |
| Cow position: | chr11:11646964-11647272 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 69, 57 |
| Conread position: | 61-355 |
| Cow position: | chr11:20238566-20238851 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 219 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 54, 143 |
| Conread position: | 61-355 |
| Cow position: | chr11:30192069-30192353 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 56, 100 |
| Conread position: | 61-355 |
| Cow position: | chr11:40608702-40608418 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 48, 131 |
| Conread position: | 61-374 |
| Cow position: | chr11:2917691-2917394 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 232 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 297, 134 |
| Conread position: | 61-382 |
| Cow position: | chr11:34646486-34646797 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 66, 23 |
| Conread position: | 62-368 |
| Cow position: | chr11:62813053-62812762 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 61, 9 |
| Conread position: | 62-373 |
| Cow position: | chr11:39060705-39060409 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 62-373 |
| Cow position: | chr11:48295926-48296220 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 28, 122 |
| Conread position: | 62-378 |
| Cow position: | chr11:62789024-62789326 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 51, 139 |
| Conread position: | 62-384 |
| Cow position: | chr11:63035282-63034968 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 109, 48 |
| Conread position: | 64-351 |
| Cow position: | chr11:83323471-83323748 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 142, 27 |
| Conread position: | 64-372 |
| Cow position: | chr11:261365-261065 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 177, 46 |
| Conread position: | 64-373 |
| Cow position: | chr11:63999192-63998894 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 226 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 50, 94 |
| Conread position: | 67-347 |
| Cow position: | chr11:34121095-34121362 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 49, 132 |
| Conread position: | 67-355 |
| Cow position: | chr11:10620430-10620117 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 67-363 |
| Cow position: | chr11:70250820-70251099 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 290, 7 |
| Conread position: | 67-375 |
| Cow position: | chr11:48544331-48544633 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 16, 9 |
| Conread position: | 67-379 |
| Cow position: | chr11:29960196-29960492 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 49, 123 |
| Conread position: | 68-293 |
| Cow position: | chr11:69119193-69119407 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 49, 129 |
| Conread position: | 68-352 |
| Cow position: | chr11:62620281-62620548 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 54, 30 |
| Conread position: | 69-187 |
| Cow position: | chr11:55911732-55911613 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 72-355 |
| Cow position: | chr11:80564198-80564472 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 48, 126 |
| Conread position: | 80-377 |
| Cow position: | chr11:33409347-33409068 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 278, 34 |
| Conread position: | 81-284 |
| Cow position: | chr11:16342317-16342125 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 5, 117 |
| Conread position: | 85-198 |
| Cow position: | chr11:54218635-54218746 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 85-402 |
| Cow position: | chr11:63866736-63866432 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 169, 24 |
| Conread position: | 86-355 |
| Cow position: | chr11:17721885-17721626 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 42, 112 |
| Conread position: | 114-406 |
| Cow position: | chr11:20205904-20205629 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 243, 83 |
| Conread position: | 134-349 |
| Cow position: | chr11:15382535-15382326 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 129, 63 |
| Conread position: | 210-376 |
| Cow position: | chr11:70821075-70821245 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 142, 40 |
| Conread position: | 211-348 |
| Cow position: | chr11:85986018-85985881 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 70 |
| Conread position: | 211-368 |
| Cow position: | chr11:63483974-63484130 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 145, 61 |
| Conread position: | 211-371 |
| Cow position: | chr11:48315365-48315205 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 146, 66 |
| Conread position: | 211-373 |
| Cow position: | chr11:42066896-42067061 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 146, 55 |
| Conread position: | 212-373 |
| Cow position: | chr11:37042004-37042168 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 65, 73 |
| Conread position: | 213-393 |
| Cow position: | chr11:12768432-12768607 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 214-374 |
| Cow position: | chr11:81340506-81340345 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 143, 88 |
| Conread position: | 214-409 |
| Cow position: | chr11:53487119-53486931 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 117, 42 |
Show alignments to all cow chromosomes.