Cow genome map
| Conread name: | Ss1.1-rcte22_m17.5 |
| Conread position: | 56-178 |
| Cow position: | chr13:20868678-20868798 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 56-365 |
| Cow position: | chr13:2774205-2773899 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 125, 63 |
| Conread position: | 57-195 |
| Cow position: | chr13:17800150-17800011 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 59, 39 |
| Conread position: | 57-198 |
| Cow position: | chr13:15528955-15529098 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 57-203 |
| Cow position: | chr13:15884943-15885091 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 57-297 |
| Cow position: | chr13:32826379-32826626 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 57-349 |
| Cow position: | chr13:19778772-19779054 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 119, 65 |
| Conread position: | 57-352 |
| Cow position: | chr13:15869199-15868907 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 109, 75 |
| Conread position: | 57-352 |
| Cow position: | chr13:41806852-41806574 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 220 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 60, 141 |
| Conread position: | 57-355 |
| Cow position: | chr13:971816-972102 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 61, 136 |
| Conread position: | 57-355 |
| Cow position: | chr13:34281753-34281476 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 63, 131 |
| Conread position: | 57-384 |
| Cow position: | chr13:54702264-54701945 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 235 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 59, 149 |
| Conread position: | 57-396 |
| Cow position: | chr13:19279173-19278847 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 115 |
| Conread position: | 61-186 |
| Cow position: | chr13:17966136-17966260 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 61-197 |
| Cow position: | chr13:21176249-21176385 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 61-198 |
| Cow position: | chr13:22085671-22085810 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 67, 50 |
| Conread position: | 61-293 |
| Cow position: | chr13:55316116-55316342 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 57, 165 |
| Conread position: | 61-294 |
| Cow position: | chr13:18172411-18172192 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 63, 49 |
| Conread position: | 61-294 |
| Cow position: | chr13:20679412-20679191 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 50 |
| Conread position: | 61-294 |
| Cow position: | chr13:20706133-20706351 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 61-350 |
| Cow position: | chr13:43480130-43479861 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 191, 126 |
| Conread position: | 61-352 |
| Cow position: | chr13:17292060-17292330 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 64, 117 |
| Conread position: | 61-355 |
| Cow position: | chr13:8374699-8374966 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 56, 136 |
| Conread position: | 61-355 |
| Cow position: | chr13:18058173-18058452 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 61-355 |
| Cow position: | chr13:20288403-20288133 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 61-355 |
| Cow position: | chr13:20880853-20881126 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 42, 141 |
| Conread position: | 61-355 |
| Cow position: | chr13:46329531-46329808 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 56, 142 |
| Conread position: | 61-367 |
| Cow position: | chr13:18696916-18696605 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 56, 145 |
| Conread position: | 61-367 |
| Cow position: | chr13:21135827-21136131 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 57, 140 |
| Conread position: | 61-373 |
| Cow position: | chr13:55674136-55674434 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 297, 45 |
| Conread position: | 61-375 |
| Cow position: | chr13:24586116-24585826 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 48, 84 |
| Conread position: | 61-376 |
| Cow position: | chr13:17970955-17971268 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 29 |
| Conread position: | 61-382 |
| Cow position: | chr13:52477573-52477880 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 67, 108 |
| Conread position: | 61-387 |
| Cow position: | chr13:14063446-14063759 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 59, 138 |
| Conread position: | 61-388 |
| Cow position: | chr13:45023139-45023464 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 55, 35 |
| Conread position: | 61-406 |
| Cow position: | chr13:20473609-20473933 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 305, 134 |
| Conread position: | 64-195 |
| Cow position: | chr13:47022429-47022304 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 64-294 |
| Cow position: | chr13:17439700-17439916 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 66-373 |
| Cow position: | chr13:15288855-15289143 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 55, 117 |
| Conread position: | 67-198 |
| Cow position: | chr13:17745312-17745179 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 67-199 |
| Cow position: | chr13:15903089-15902959 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 67-203 |
| Cow position: | chr13:8402123-8401986 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 125 |
| Conread position: | 67-216 |
| Cow position: | chr13:10098924-10099070 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 71, 32 |
| Conread position: | 67-297 |
| Cow position: | chr13:20684054-20684278 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 65, 143 |
| Conread position: | 67-355 |
| Cow position: | chr13:25817595-25817324 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 60, 129 |
| Conread position: | 67-371 |
| Cow position: | chr13:20784661-20784373 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 47, 136 |
| Conread position: | 67-372 |
| Cow position: | chr13:54388952-54389243 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 50, 134 |
| Conread position: | 67-373 |
| Cow position: | chr13:26698431-26698720 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 42, 119 |
| Conread position: | 67-374 |
| Cow position: | chr13:13320861-13320576 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 68-352 |
| Cow position: | chr13:20820770-20821039 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 68-378 |
| Cow position: | chr13:24369648-24369358 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 54, 128 |
| Conread position: | 70-355 |
| Cow position: | chr13:20314555-20314830 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 27, 128 |
| Conread position: | 70-368 |
| Cow position: | chr13:17114312-17114602 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 48, 128 |
| Conread position: | 73-373 |
| Cow position: | chr13:18197546-18197830 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 217 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 47, 82 |
| Conread position: | 75-355 |
| Cow position: | chr13:35557046-35557316 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 37, 126 |
| Conread position: | 85-373 |
| Cow position: | chr13:15257320-15257589 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 34, 45 |
| Conread position: | 86-368 |
| Cow position: | chr13:46525388-46525649 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 271, 22 |
| Conread position: | 89-376 |
| Cow position: | chr13:20217350-20217620 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 31, 43 |
| Conread position: | 122-400 |
| Cow position: | chr13:1462285-1462543 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 235, 42 |
| Conread position: | 125-355 |
| Cow position: | chr13:37614182-37614403 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 87, 9 |
| Conread position: | 147-355 |
| Cow position: | chr13:53850811-53850615 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 133, 50 |
| Conread position: | 148-355 |
| Cow position: | chr13:33854698-33854886 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 211-351 |
| Cow position: | chr13:16908153-16908012 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 211-355 |
| Cow position: | chr13:16525287-16525433 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 61, 12 |
| Conread position: | 211-370 |
| Cow position: | chr13:14644987-14644832 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 147, 60 |
| Conread position: | 211-373 |
| Cow position: | chr13:3153686-3153523 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 28 |
| Conread position: | 211-373 |
| Cow position: | chr13:23478838-23478675 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 147, 71 |
| Conread position: | 211-373 |
| Cow position: | chr13:28081658-28081489 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 211-375 |
| Cow position: | chr13:22345338-22345502 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 109, 61 |
| Conread position: | 211-375 |
| Cow position: | chr13:25313213-25313370 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 211-384 |
| Cow position: | chr13:6189664-6189836 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 146, 69 |
| Conread position: | 211-412 |
| Cow position: | chr13:6951515-6951324 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 213-373 |
| Cow position: | chr13:8699803-8699967 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 213-376 |
| Cow position: | chr13:37554939-37555101 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 144, 69 |
| Conread position: | 213-378 |
| Cow position: | chr13:23399700-23399538 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 69, 90 |
| Conread position: | 215-373 |
| Cow position: | chr13:53619936-53619773 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 223-403 |
| Cow position: | chr13:45439455-45439274 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 134, 79 |
Show alignments to all cow chromosomes.