Cow genome map

Conread name: Ss1.1-rcte22_m17.5

Conread position: 51-355
Cow position: chr15:39598429-39598143 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 213
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 69, 52

Conread position: 52-371
Cow position: chr15:33643277-33642973 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 226
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 65, 18

Conread position: 54-198
Cow position: chr15:21821174-21821027 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 14, 131

Conread position: 57-172
Cow position: chr15:5730122-5730006 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 61, 69

Conread position: 57-198
Cow position: chr15:38877125-38877264 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 63, 25

Conread position: 57-203
Cow position: chr15:6530667-6530813 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 57-276
Cow position: chr15:16307593-16307397 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 33, 0

Conread position: 57-361
Cow position: chr15:16657672-16657362 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 202
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 52, 72

Conread position: 57-370
Cow position: chr15:1329922-1330225 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 212
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 52, 65

Conread position: 57-371
Cow position: chr15:20391094-20391397 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 222
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 61, 84

Conread position: 57-373
Cow position: chr15:51307499-51307791 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 223
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 69, 124

Conread position: 57-375
Cow position: chr15:30047362-30047678 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 226
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 60, 141

Conread position: 57-404
Cow position: chr15:35642199-35641863 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 222
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 186, 66

Conread position: 61-177
Cow position: chr15:18647554-18647435 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 61-203
Cow position: chr15:13515545-13515401 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 53, 0

Conread position: 61-349
Cow position: chr15:8354220-8353945 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 206
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 66, 140

Conread position: 61-349
Cow position: chr15:14888464-14888733 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 211
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 53, 148

Conread position: 61-352
Cow position: chr15:22532414-22532154 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 212
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 49, 0

Conread position: 61-353
Cow position: chr15:23696734-23697002 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 205
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 56, 61

Conread position: 61-355
Cow position: chr15:36259426-36259699 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 211
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 70, 136

Conread position: 61-364
Cow position: chr15:14576511-14576218 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 217
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 57, 142

Conread position: 61-379
Cow position: chr15:30470793-30471107 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 226
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 66, 136

Conread position: 64-179
Cow position: chr15:2380530-2380411 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 64-345
Cow position: chr15:36353842-36353577 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 199
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 53, 21

Conread position: 64-355
Cow position: chr15:53716606-53716332 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 200
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 25, 0

Conread position: 67-203
Cow position: chr15:26404451-26404318 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 67-278
Cow position: chr15:16908602-16908406 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 33, 0

Conread position: 67-294
Cow position: chr15:42788977-42789192 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 70, 42

Conread position: 67-355
Cow position: chr15:25208592-25208861 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 200
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 44, 0

Conread position: 67-373
Cow position: chr15:3700115-3700405 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 224
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 49, 99

Conread position: 69-175
Cow position: chr15:16261482-16261376 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 92
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 51, 57

Conread position: 70-356
Cow position: chr15:5420713-5420985 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 206
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 54, 112

Conread position: 70-382
Cow position: chr15:14988157-14987865 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 223
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 47, 14

Conread position: 74-378
Cow position: chr15:36846011-36846312 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 212
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 53, 115

Conread position: 85-285
Cow position: chr15:44237571-44237383 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 41, 104

Conread position: 85-355
Cow position: chr15:47042475-47042745 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 199
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 35, 111

Conread position: 87-355
Cow position: chr15:3695785-3695535 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 198
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 27, 104

Conread position: 111-355
Cow position: chr15:50333108-50332873 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 177
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 23, 82

Conread position: 111-373
Cow position: chr15:244908-244658 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 188
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 185, 82

Conread position: 119-355
Cow position: chr15:21903291-21903509 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 166
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 153, 77

Conread position: 122-373
Cow position: chr15:26851110-26851344 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 179
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 66, 0

Conread position: 126-355
Cow position: chr15:26442327-26442112 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 71, 0

Conread position: 147-373
Cow position: chr15:34223957-34223745 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 161
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 199, 54

Conread position: 210-372
Cow position: chr15:41475789-41475950 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 147, 67

Conread position: 211-352
Cow position: chr15:28099152-28099013 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 211-355
Cow position: chr15:840108-840249 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 69, 85

Conread position: 211-356
Cow position: chr15:18703895-18704036 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 50, 71

Conread position: 211-373
Cow position: chr15:848683-848526 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 146, 61

Conread position: 211-373
Cow position: chr15:26896654-26896816 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 71, 146

Conread position: 211-399
Cow position: chr15:39473892-39474083 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 131
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 211-402
Cow position: chr15:27657145-27656950 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 137
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 69, 90

Conread position: 213-373
Cow position: chr15:27975833-27975997 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 69, 0

Conread position: 218-373
Cow position: chr15:47920117-47920270 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 139, 62

Show alignments to all cow chromosomes.