Cow genome map
| Conread name: | Ss1.1-rcte22_m17.5 |
| Conread position: | 22-356 |
| Cow position: | chr16:4910650-4910329 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 42-198 |
| Cow position: | chr16:35477525-35477365 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 44-284 |
| Cow position: | chr16:17288840-17289070 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 6, 145 |
| Conread position: | 44-351 |
| Cow position: | chr16:23730032-23729730 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 14, 154 |
| Conread position: | 54-373 |
| Cow position: | chr16:13611548-13611227 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 51, 58 |
| Conread position: | 55-201 |
| Cow position: | chr16:50532959-50533108 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 56-278 |
| Cow position: | chr16:20069739-20069949 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 66, 139 |
| Conread position: | 57-291 |
| Cow position: | chr16:21039936-21040157 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 28 |
| Conread position: | 57-352 |
| Cow position: | chr16:25839527-25839800 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 51, 140 |
| Conread position: | 57-373 |
| Cow position: | chr16:9973590-9973268 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 68, 77 |
| Conread position: | 57-374 |
| Cow position: | chr16:9904999-9905308 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 52, 65 |
| Conread position: | 57-382 |
| Cow position: | chr16:30135985-30135656 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 64, 122 |
| Conread position: | 57-393 |
| Cow position: | chr16:7504996-7505307 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 68, 140 |
| Conread position: | 57-398 |
| Cow position: | chr16:56796757-56796419 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 202, 148 |
| Conread position: | 57-408 |
| Cow position: | chr16:46433421-46433079 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 246 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 61, 143 |
| Conread position: | 60-374 |
| Cow position: | chr16:47274827-47274510 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 65, 10 |
| Conread position: | 61-198 |
| Cow position: | chr16:17903737-17903595 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 68, 49 |
| Conread position: | 61-203 |
| Cow position: | chr16:45731476-45731332 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 61-203 |
| Cow position: | chr16:50873253-50873115 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 8, 55 |
| Conread position: | 61-293 |
| Cow position: | chr16:5363808-5364034 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 56, 139 |
| Conread position: | 61-293 |
| Cow position: | chr16:40562143-40562360 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 55, 139 |
| Conread position: | 61-294 |
| Cow position: | chr16:48340784-48340563 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 61, 137 |
| Conread position: | 61-343 |
| Cow position: | chr16:25170306-25170573 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 67, 49 |
| Conread position: | 61-344 |
| Cow position: | chr16:45139584-45139845 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 61-351 |
| Cow position: | chr16:33645927-33646203 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 62, 23 |
| Conread position: | 61-351 |
| Cow position: | chr16:48146746-48146466 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 9, 25 |
| Conread position: | 61-355 |
| Cow position: | chr16:8239953-8239672 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 55, 28 |
| Conread position: | 61-361 |
| Cow position: | chr16:12320134-12320422 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 59, 23 |
| Conread position: | 61-368 |
| Cow position: | chr16:48095852-48095564 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 10, 61 |
| Conread position: | 61-371 |
| Cow position: | chr16:7075826-7076129 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 66, 128 |
| Conread position: | 61-371 |
| Cow position: | chr16:26649717-26649424 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 57, 141 |
| Conread position: | 61-371 |
| Cow position: | chr16:34754048-34753746 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 54, 121 |
| Conread position: | 61-372 |
| Cow position: | chr16:30036147-30036448 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 58, 75 |
| Conread position: | 61-373 |
| Cow position: | chr16:13689577-13689874 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 225 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 66, 138 |
| Conread position: | 61-373 |
| Cow position: | chr16:31149304-31149588 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 296, 10 |
| Conread position: | 61-378 |
| Cow position: | chr16:31117702-31117405 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 57, 98 |
| Conread position: | 61-402 |
| Cow position: | chr16:45121951-45122281 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 221, 47 |
| Conread position: | 61-407 |
| Cow position: | chr16:8737977-8738319 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 52, 137 |
| Conread position: | 61-408 |
| Cow position: | chr16:14754410-14754086 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 61-409 |
| Cow position: | chr16:13306951-13306623 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 292, 19 |
| Conread position: | 62-282 |
| Cow position: | chr16:16933032-16933239 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 62 |
| Conread position: | 64-291 |
| Cow position: | chr16:34220099-34220315 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 134 |
| Conread position: | 64-329 |
| Cow position: | chr16:33226623-33226372 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 62, 107 |
| Conread position: | 64-355 |
| Cow position: | chr16:40514565-40514301 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 64-381 |
| Cow position: | chr16:42078925-42078629 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 229 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 293, 47 |
| Conread position: | 64-401 |
| Cow position: | chr16:7418301-7418618 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 292, 46 |
| Conread position: | 67-281 |
| Cow position: | chr16:36203706-36203499 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 49, 120 |
| Conread position: | 67-294 |
| Cow position: | chr16:5256912-5257129 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 47, 129 |
| Conread position: | 67-297 |
| Cow position: | chr16:33054565-33054342 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 54, 135 |
| Conread position: | 67-320 |
| Cow position: | chr16:25386893-25387131 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 49, 110 |
| Conread position: | 67-355 |
| Cow position: | chr16:45677895-45678169 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 7, 129 |
| Conread position: | 67-370 |
| Cow position: | chr16:10592353-10592655 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 165, 42 |
| Conread position: | 67-374 |
| Cow position: | chr16:16597479-16597771 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 290, 51 |
| Conread position: | 67-375 |
| Cow position: | chr16:42092465-42092164 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 126, 17 |
| Conread position: | 67-388 |
| Cow position: | chr16:4857183-4856875 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 51, 124 |
| Conread position: | 67-405 |
| Cow position: | chr16:53792900-53792559 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 104, 51 |
| Conread position: | 70-373 |
| Cow position: | chr16:30305893-30305606 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 42, 121 |
| Conread position: | 75-361 |
| Cow position: | chr16:44239330-44239623 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 85-374 |
| Cow position: | chr16:20824420-20824690 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 272, 15 |
| Conread position: | 85-385 |
| Cow position: | chr16:11135046-11134763 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 42, 114 |
| Conread position: | 86-355 |
| Cow position: | chr16:45294480-45294737 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 47, 117 |
| Conread position: | 86-383 |
| Cow position: | chr16:11584460-11584183 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 87, 31 |
| Conread position: | 87-356 |
| Cow position: | chr16:16816762-16817024 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 28, 119 |
| Conread position: | 90-376 |
| Cow position: | chr16:48613532-48613269 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 142-352 |
| Cow position: | chr16:5396837-5396627 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 53, 62 |
| Conread position: | 211-355 |
| Cow position: | chr16:12324505-12324646 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 32, 28 |
| Conread position: | 211-355 |
| Cow position: | chr16:53451755-53451897 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 132, 60 |
| Conread position: | 211-356 |
| Cow position: | chr16:16025486-16025637 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 211-373 |
| Cow position: | chr16:10011803-10011638 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 32, 28 |
| Conread position: | 211-373 |
| Cow position: | chr16:21442561-21442397 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 28 |
| Conread position: | 211-413 |
| Cow position: | chr16:12111916-12111711 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 145, 84 |
| Conread position: | 213-357 |
| Cow position: | chr16:33458632-33458774 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 135, 15 |
| Conread position: | 214-354 |
| Cow position: | chr16:41653026-41653163 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 220-355 |
| Cow position: | chr16:23033886-23034021 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 80, 62 |
Show alignments to all cow chromosomes.