Cow genome map
| Conread name: | Ss1.1-rcte22_m17.5 |
| Conread position: | 44-269 |
| Cow position: | chr17:1040681-1040892 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 11, 72 |
| Conread position: | 46-350 |
| Cow position: | chr17:36331021-36330740 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 12, 153 |
| Conread position: | 57-180 |
| Cow position: | chr17:10510709-10510585 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 57-261 |
| Cow position: | chr17:11368902-11368710 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 68, 131 |
| Conread position: | 57-291 |
| Cow position: | chr17:23516993-23516772 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 67, 57 |
| Conread position: | 57-353 |
| Cow position: | chr17:28285081-28284806 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 61, 23 |
| Conread position: | 57-355 |
| Cow position: | chr17:13922428-13922714 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 52, 152 |
| Conread position: | 57-355 |
| Cow position: | chr17:24750866-24751144 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 214, 53 |
| Conread position: | 57-355 |
| Cow position: | chr17:40638899-40639179 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 219, 53 |
| Conread position: | 57-361 |
| Cow position: | chr17:20780460-20780761 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 156, 64 |
| Conread position: | 57-373 |
| Cow position: | chr17:21325282-21325594 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 220, 40 |
| Conread position: | 57-373 |
| Cow position: | chr17:32419164-32418864 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 300, 30 |
| Conread position: | 57-373 |
| Cow position: | chr17:40741597-40741900 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 57-376 |
| Cow position: | chr17:6423710-6424009 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 71, 141 |
| Conread position: | 58-323 |
| Cow position: | chr17:18109135-18108886 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 66, 130 |
| Conread position: | 58-355 |
| Cow position: | chr17:4225543-4225254 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 148, 17 |
| Conread position: | 58-355 |
| Cow position: | chr17:25901147-25901440 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 62, 140 |
| Conread position: | 61-275 |
| Cow position: | chr17:21758185-21757987 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 61-276 |
| Cow position: | chr17:12591120-12591329 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 55, 109 |
| Conread position: | 61-278 |
| Cow position: | chr17:20990241-20990033 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 61, 29 |
| Conread position: | 61-351 |
| Cow position: | chr17:10432023-10431736 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 225, 60 |
| Conread position: | 61-353 |
| Cow position: | chr17:5423117-5422848 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 65, 23 |
| Conread position: | 61-354 |
| Cow position: | chr17:12536515-12536243 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 48, 136 |
| Conread position: | 61-355 |
| Cow position: | chr17:22017134-22016832 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 61, 284 |
| Conread position: | 61-355 |
| Cow position: | chr17:25128395-25128122 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 216, 50 |
| Conread position: | 61-355 |
| Cow position: | chr17:32138466-32138184 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 19 |
| Conread position: | 61-355 |
| Cow position: | chr17:33933795-33933516 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 58, 137 |
| Conread position: | 61-355 |
| Cow position: | chr17:34791113-34790833 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 66, 58 |
| Conread position: | 61-364 |
| Cow position: | chr17:908696-908981 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 297, 61 |
| Conread position: | 61-368 |
| Cow position: | chr17:24587575-24587869 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 55, 136 |
| Conread position: | 61-368 |
| Cow position: | chr17:32471831-32471543 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 53, 140 |
| Conread position: | 61-376 |
| Cow position: | chr17:9824622-9824922 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 296, 134 |
| Conread position: | 61-378 |
| Cow position: | chr17:11664636-11664321 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 235 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 18, 139 |
| Conread position: | 62-355 |
| Cow position: | chr17:20157559-20157840 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 59, 48 |
| Conread position: | 64-209 |
| Cow position: | chr17:4601588-4601444 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 113, 20 |
| Conread position: | 64-355 |
| Cow position: | chr17:35051563-35051852 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 147, 55 |
| Conread position: | 64-371 |
| Cow position: | chr17:33155199-33154908 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 56, 98 |
| Conread position: | 64-373 |
| Cow position: | chr17:31037424-31037131 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 136 |
| Conread position: | 67-203 |
| Cow position: | chr17:21478963-21478827 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 123 |
| Conread position: | 67-293 |
| Cow position: | chr17:1410280-1410068 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 53, 133 |
| Conread position: | 67-352 |
| Cow position: | chr17:7810785-7810518 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 176, 43 |
| Conread position: | 67-355 |
| Cow position: | chr17:6318908-6318636 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 55, 77 |
| Conread position: | 67-355 |
| Cow position: | chr17:21039523-21039788 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 67-355 |
| Cow position: | chr17:24973911-24974175 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 67-356 |
| Cow position: | chr17:32989435-32989706 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 49, 77 |
| Conread position: | 67-356 |
| Cow position: | chr17:32993665-32993394 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 49, 77 |
| Conread position: | 67-373 |
| Cow position: | chr17:30728470-30728759 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 273, 17 |
| Conread position: | 67-374 |
| Cow position: | chr17:25800923-25800631 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 110, 130 |
| Conread position: | 67-378 |
| Cow position: | chr17:12447443-12447147 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 46, 130 |
| Conread position: | 70-355 |
| Cow position: | chr17:24824204-24824478 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 203, 125 |
| Conread position: | 70-363 |
| Cow position: | chr17:17044371-17044095 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 60, 128 |
| Conread position: | 75-376 |
| Cow position: | chr17:32333125-32332835 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 59, 120 |
| Conread position: | 76-392 |
| Cow position: | chr17:3467727-3468017 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 80-355 |
| Cow position: | chr17:33288687-33288426 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 40, 123 |
| Conread position: | 85-344 |
| Cow position: | chr17:41429614-41429367 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 85-353 |
| Cow position: | chr17:26575254-26574992 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 31, 115 |
| Conread position: | 88-388 |
| Cow position: | chr17:25473300-25473012 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 269, 109 |
| Conread position: | 96-355 |
| Cow position: | chr17:37341053-37340799 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 19, 115 |
| Conread position: | 103-351 |
| Cow position: | chr17:21466269-21466030 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 28, 92 |
| Conread position: | 114-355 |
| Cow position: | chr17:22223706-22223946 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 92, 8 |
| Conread position: | 122-373 |
| Cow position: | chr17:17034963-17035193 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 125-373 |
| Cow position: | chr17:42150408-42150640 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 232, 74 |
| Conread position: | 152-383 |
| Cow position: | chr17:21676934-21677154 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 205, 43 |
| Conread position: | 211-361 |
| Cow position: | chr17:17782145-17782291 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 146, 56 |
| Conread position: | 211-361 |
| Cow position: | chr17:34806577-34806423 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 211-370 |
| Cow position: | chr17:10016369-10016527 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 146, 26 |
| Conread position: | 211-372 |
| Cow position: | chr17:21718907-21718746 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 146, 86 |
| Conread position: | 211-372 |
| Cow position: | chr17:22241094-22241260 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 90, 52 |
| Conread position: | 211-373 |
| Cow position: | chr17:9260522-9260360 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 146, 71 |
| Conread position: | 211-373 |
| Cow position: | chr17:24895163-24895330 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 126 |
| Conread position: | 211-374 |
| Cow position: | chr17:20881719-20881565 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 211-384 |
| Cow position: | chr17:20836180-20836347 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 212-374 |
| Cow position: | chr17:7711528-7711683 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 74, 84 |
| Conread position: | 237-374 |
| Cow position: | chr17:20930418-20930557 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 16, 42 |
Show alignments to all cow chromosomes.