Cow genome map
| Conread name: | Ss1.1-rcte22_m17.5 |
| Conread position: | 37-341 |
| Cow position: | chr18:34834346-34834640 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 54, 124 |
| Conread position: | 52-355 |
| Cow position: | chr18:20641618-20641343 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 54-273 |
| Cow position: | chr18:11684853-11685060 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 64, 142 |
| Conread position: | 55-355 |
| Cow position: | chr18:52403098-52402807 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 58, 148 |
| Conread position: | 57-198 |
| Cow position: | chr18:4540003-4539866 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 57-203 |
| Cow position: | chr18:33407491-33407638 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 57-203 |
| Cow position: | chr18:44483897-44483752 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 8, 50 |
| Conread position: | 57-334 |
| Cow position: | chr18:55000868-55000600 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 60, 140 |
| Conread position: | 57-355 |
| Cow position: | chr18:9365792-9366080 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 144 |
| Conread position: | 57-355 |
| Cow position: | chr18:11691532-11691248 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 59, 40 |
| Conread position: | 57-355 |
| Cow position: | chr18:25647376-25647060 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 57-372 |
| Cow position: | chr18:20126181-20126470 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 69, 42 |
| Conread position: | 57-374 |
| Cow position: | chr18:9010597-9010883 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 297, 35 |
| Conread position: | 57-374 |
| Cow position: | chr18:42432218-42431919 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 62, 117 |
| Conread position: | 57-399 |
| Cow position: | chr18:29356751-29356426 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 66, 139 |
| Conread position: | 57-401 |
| Cow position: | chr18:42751736-42751384 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 23, 194 |
| Conread position: | 58-331 |
| Cow position: | chr18:28658032-28657780 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 59-372 |
| Cow position: | chr18:17391105-17390811 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 223, 51 |
| Conread position: | 59-374 |
| Cow position: | chr18:49038337-49038633 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 231 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 54, 140 |
| Conread position: | 60-375 |
| Cow position: | chr18:49841157-49841464 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 70, 55 |
| Conread position: | 61-186 |
| Cow position: | chr18:44549035-44548908 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 61-203 |
| Cow position: | chr18:16686457-16686314 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 61-203 |
| Cow position: | chr18:23766533-23766389 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 61-278 |
| Cow position: | chr18:31711687-31711479 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 55, 9 |
| Conread position: | 61-284 |
| Cow position: | chr18:48451938-48452160 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 55, 99 |
| Conread position: | 61-290 |
| Cow position: | chr18:33007940-33008162 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 64, 119 |
| Conread position: | 61-331 |
| Cow position: | chr18:47511885-47512133 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 61-348 |
| Cow position: | chr18:11779535-11779804 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 61-352 |
| Cow position: | chr18:55505287-55505558 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 61-355 |
| Cow position: | chr18:9974444-9974172 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 61-355 |
| Cow position: | chr18:33158833-33159101 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 61-355 |
| Cow position: | chr18:33896550-33896256 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 55, 117 |
| Conread position: | 61-355 |
| Cow position: | chr18:38985571-38985849 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 69, 108 |
| Conread position: | 61-372 |
| Cow position: | chr18:55119749-55120044 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 52, 143 |
| Conread position: | 62-195 |
| Cow position: | chr18:45570893-45571027 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 62-373 |
| Cow position: | chr18:22790210-22789913 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 10, 94 |
| Conread position: | 62-382 |
| Cow position: | chr18:35535270-35534963 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 43, 139 |
| Conread position: | 64-194 |
| Cow position: | chr18:29991631-29991498 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 64-380 |
| Cow position: | chr18:8299898-8300208 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 50, 134 |
| Conread position: | 67-177 |
| Cow position: | chr18:30248251-30248141 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 95, 58 |
| Conread position: | 67-269 |
| Cow position: | chr18:33299787-33299978 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 60, 132 |
| Conread position: | 67-278 |
| Cow position: | chr18:51594917-51594721 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 67-355 |
| Cow position: | chr18:10575988-10576261 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 50, 135 |
| Conread position: | 67-373 |
| Cow position: | chr18:42431727-42431435 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 48, 128 |
| Conread position: | 68-205 |
| Cow position: | chr18:51212067-51212207 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 70-355 |
| Cow position: | chr18:43797065-43796801 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 78-412 |
| Cow position: | chr18:34220025-34219691 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 221, 43 |
| Conread position: | 121-372 |
| Cow position: | chr18:52649408-52649160 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 156, 76 |
| Conread position: | 134-355 |
| Cow position: | chr18:50632490-50632287 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 157-361 |
| Cow position: | chr18:6829157-6828959 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 86, 42 |
| Conread position: | 211-352 |
| Cow position: | chr18:44548730-44548591 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 211-352 |
| Cow position: | chr18:49440857-49440998 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 211-355 |
| Cow position: | chr18:34444720-34444579 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 211-355 |
| Cow position: | chr18:49603027-49602884 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 32, 28 |
| Conread position: | 211-355 |
| Cow position: | chr18:50004689-50004548 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 211-373 |
| Cow position: | chr18:4485615-4485772 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 211-374 |
| Cow position: | chr18:4907163-4907321 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 211-374 |
| Cow position: | chr18:18844032-18844190 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 146, 66 |
| Conread position: | 211-374 |
| Cow position: | chr18:41702850-41703014 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 146, 71 |
| Conread position: | 212-355 |
| Cow position: | chr18:50276226-50276084 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 87, 65 |
Show alignments to all cow chromosomes.