Cow genome map
| Conread name: | Ss1.1-rcte22_m17.5 |
| Conread position: | 28-177 |
| Cow position: | chr19:33858598-33858746 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 8, 83 |
| Conread position: | 47-374 |
| Cow position: | chr19:23889595-23889289 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 24, 65 |
| Conread position: | 51-204 |
| Cow position: | chr19:19665530-19665379 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 69, 132 |
| Conread position: | 53-265 |
| Cow position: | chr19:11212507-11212307 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 62, 19 |
| Conread position: | 54-373 |
| Cow position: | chr19:13129767-13130060 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 64, 137 |
| Conread position: | 56-355 |
| Cow position: | chr19:46454742-46455021 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 9, 15 |
| Conread position: | 57-177 |
| Cow position: | chr19:20693394-20693517 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 57-186 |
| Cow position: | chr19:15767098-15767229 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 42 |
| Conread position: | 57-203 |
| Cow position: | chr19:13757146-13757293 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 57-277 |
| Cow position: | chr19:35540194-35540403 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 57-331 |
| Cow position: | chr19:15719721-15719469 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 57-351 |
| Cow position: | chr19:21378572-21378290 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 58, 28 |
| Conread position: | 57-352 |
| Cow position: | chr19:22043454-22043180 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 56, 66 |
| Conread position: | 57-352 |
| Cow position: | chr19:41946083-41946359 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 57-355 |
| Cow position: | chr19:52158432-52158722 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 52, 113 |
| Conread position: | 57-368 |
| Cow position: | chr19:35762355-35762062 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 56, 36 |
| Conread position: | 57-370 |
| Cow position: | chr19:48960293-48960591 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 58, 140 |
| Conread position: | 57-374 |
| Cow position: | chr19:39057141-39057450 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 61, 43 |
| Conread position: | 57-375 |
| Cow position: | chr19:24144918-24145222 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 300, 58 |
| Conread position: | 57-378 |
| Cow position: | chr19:7637341-7637036 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 57, 147 |
| Conread position: | 57-395 |
| Cow position: | chr19:7668596-7668916 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 61, 134 |
| Conread position: | 61-198 |
| Cow position: | chr19:8033647-8033786 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 61-198 |
| Cow position: | chr19:37646937-37646798 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 84 |
| Conread position: | 61-203 |
| Cow position: | chr19:11376504-11376360 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 126 |
| Conread position: | 61-227 |
| Cow position: | chr19:19549647-19549478 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 52, 153 |
| Conread position: | 61-273 |
| Cow position: | chr19:25954837-25954632 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 59, 69 |
| Conread position: | 61-275 |
| Cow position: | chr19:20984872-20984671 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 61-287 |
| Cow position: | chr19:18786422-18786209 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 56, 116 |
| Conread position: | 61-355 |
| Cow position: | chr19:14632134-14631861 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 61-355 |
| Cow position: | chr19:33903521-33903246 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 61-372 |
| Cow position: | chr19:39576669-39576372 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 59, 140 |
| Conread position: | 61-373 |
| Cow position: | chr19:6417496-6417808 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 57, 135 |
| Conread position: | 61-373 |
| Cow position: | chr19:23378588-23378877 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 296, 49 |
| Conread position: | 61-374 |
| Cow position: | chr19:3621332-3621628 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 258, 61 |
| Conread position: | 61-374 |
| Cow position: | chr19:24759983-24759691 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 61-375 |
| Cow position: | chr19:10213571-10213868 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 66, 138 |
| Conread position: | 61-375 |
| Cow position: | chr19:21199038-21199351 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 66, 136 |
| Conread position: | 61-381 |
| Cow position: | chr19:35742061-35742398 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 62-355 |
| Cow position: | chr19:7148164-7147876 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 13, 138 |
| Conread position: | 63-352 |
| Cow position: | chr19:26057648-26057374 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 57, 21 |
| Conread position: | 63-370 |
| Cow position: | chr19:55583431-55583734 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 56, 77 |
| Conread position: | 64-186 |
| Cow position: | chr19:23786097-23786220 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 64-294 |
| Cow position: | chr19:51230920-51230706 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 64-353 |
| Cow position: | chr19:33987969-33988247 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 55, 29 |
| Conread position: | 64-355 |
| Cow position: | chr19:15068098-15067829 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 257, 20 |
| Conread position: | 66-361 |
| Cow position: | chr19:50161898-50162181 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 67-278 |
| Cow position: | chr19:34620123-34619924 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 60, 106 |
| Conread position: | 67-352 |
| Cow position: | chr19:47453337-47453608 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 51, 131 |
| Conread position: | 67-355 |
| Cow position: | chr19:39751386-39751651 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 67-355 |
| Cow position: | chr19:49221709-49221442 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 70-319 |
| Cow position: | chr19:55930272-55930028 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 47, 27 |
| Conread position: | 73-375 |
| Cow position: | chr19:12052934-12052646 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 73-375 |
| Cow position: | chr19:12067657-12067945 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 79-391 |
| Cow position: | chr19:13488586-13488290 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 222 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 49, 122 |
| Conread position: | 85-355 |
| Cow position: | chr19:42768174-42767923 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 41, 115 |
| Conread position: | 87-349 |
| Cow position: | chr19:33913451-33913704 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 28, 113 |
| Conread position: | 88-373 |
| Cow position: | chr19:10238664-10238936 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 35, 9 |
| Conread position: | 91-355 |
| Cow position: | chr19:34758068-34757812 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 186, 19 |
| Conread position: | 138-367 |
| Cow position: | chr19:24692986-24693197 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 219, 59 |
| Conread position: | 141-355 |
| Cow position: | chr19:39981717-39981919 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 12, 57 |
| Conread position: | 194-351 |
| Cow position: | chr19:22956662-22956821 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 85, 15 |
| Conread position: | 211-361 |
| Cow position: | chr19:21790771-21790919 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 211-372 |
| Cow position: | chr19:22871217-22871059 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 71, 92 |
| Conread position: | 211-373 |
| Cow position: | chr19:4602656-4602497 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 143, 60 |
| Conread position: | 211-373 |
| Cow position: | chr19:52728650-52728809 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 211-382 |
| Cow position: | chr19:6854956-6855127 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 146, 60 |
| Conread position: | 211-383 |
| Cow position: | chr19:53189817-53189645 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 71, 146 |
| Conread position: | 211-384 |
| Cow position: | chr19:15852965-15853139 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 146, 66 |
| Conread position: | 211-399 |
| Cow position: | chr19:27968658-27968469 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 66, 99 |
| Conread position: | 212-388 |
| Cow position: | chr19:41388801-41388975 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 145, 51 |
| Conread position: | 227-375 |
| Cow position: | chr19:22838312-22838462 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 26, 37 |
| Conread position: | 229-373 |
| Cow position: | chr19:49958926-49959068 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 242-403 |
| Cow position: | chr19:10177647-10177802 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 151, 40 |
Show alignments to all cow chromosomes.