Cow genome map
| Conread name: | Ss1.1-rcte22_m17.5 |
| Conread position: | 42-350 |
| Cow position: | chr20:28605144-28605435 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 8, 46 |
| Conread position: | 51-403 |
| Cow position: | chr20:33435221-33434871 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 76, 129 |
| Conread position: | 54-382 |
| Cow position: | chr20:8556322-8556009 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 64, 86 |
| Conread position: | 57-203 |
| Cow position: | chr20:21204311-21204455 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 57-268 |
| Cow position: | chr20:23792561-23792753 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 57-347 |
| Cow position: | chr20:38670710-38670992 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 157, 46 |
| Conread position: | 57-352 |
| Cow position: | chr20:12582006-12581725 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 141 |
| Conread position: | 57-355 |
| Cow position: | chr20:31740270-31739983 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 70, 140 |
| Conread position: | 57-356 |
| Cow position: | chr20:12420668-12420384 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 216 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 67, 139 |
| Conread position: | 57-363 |
| Cow position: | chr20:28982650-28982940 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 69, 127 |
| Conread position: | 57-386 |
| Cow position: | chr20:15548949-15548621 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 55, 152 |
| Conread position: | 58-198 |
| Cow position: | chr20:39267007-39266866 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 12, 84 |
| Conread position: | 58-203 |
| Cow position: | chr20:23505779-23505925 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 70, 53 |
| Conread position: | 61-172 |
| Cow position: | chr20:38817961-38818073 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 61-203 |
| Cow position: | chr20:4787058-4786917 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 55, 126 |
| Conread position: | 61-203 |
| Cow position: | chr20:19363408-19363265 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 58, 23 |
| Conread position: | 61-203 |
| Cow position: | chr20:20203171-20203315 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 61-352 |
| Cow position: | chr20:14980559-14980276 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 9, 142 |
| Conread position: | 61-355 |
| Cow position: | chr20:13269582-13269848 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 264, 24 |
| Conread position: | 61-373 |
| Cow position: | chr20:12996055-12995744 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 53, 163 |
| Conread position: | 61-373 |
| Cow position: | chr20:38514737-38515038 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 219, 45 |
| Conread position: | 61-375 |
| Cow position: | chr20:24069759-24070057 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 222 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 54, 136 |
| Conread position: | 61-376 |
| Cow position: | chr20:22065026-22065317 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 64-326 |
| Cow position: | chr20:17100319-17100564 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 63, 126 |
| Conread position: | 64-355 |
| Cow position: | chr20:8578206-8578489 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 49, 134 |
| Conread position: | 64-368 |
| Cow position: | chr20:5998714-5998417 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 212 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 51, 137 |
| Conread position: | 64-383 |
| Cow position: | chr20:398346-398049 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 67, 29 |
| Conread position: | 67-282 |
| Cow position: | chr20:38768495-38768301 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 67-352 |
| Cow position: | chr20:7426233-7425967 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 67-361 |
| Cow position: | chr20:39398447-39398723 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 210, 54 |
| Conread position: | 67-374 |
| Cow position: | chr20:14806847-14807139 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 223 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 60, 131 |
| Conread position: | 88-375 |
| Cow position: | chr20:5702704-5702978 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 14, 114 |
| Conread position: | 97-374 |
| Cow position: | chr20:32847333-32847598 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 114-353 |
| Cow position: | chr20:2819553-2819780 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 157, 25 |
| Conread position: | 152-355 |
| Cow position: | chr20:13805362-13805550 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 207-352 |
| Cow position: | chr20:38061677-38061542 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 211-349 |
| Cow position: | chr20:12033530-12033398 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 211-352 |
| Cow position: | chr20:16977752-16977606 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 211-374 |
| Cow position: | chr20:4892027-4891863 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 146, 68 |
| Conread position: | 211-411 |
| Cow position: | chr20:26387553-26387748 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 146, 52 |
| Conread position: | 219-402 |
| Cow position: | chr20:23358395-23358208 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 138, 61 |
Show alignments to all cow chromosomes.