Cow genome map
| Conread name: | Ss1.1-rcte22_m17.5 |
| Conread position: | 42-378 |
| Cow position: | chr21:40266085-40266401 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 77, 8 |
| Conread position: | 43-352 |
| Cow position: | chr21:868968-868667 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 12, 56 |
| Conread position: | 44-198 |
| Cow position: | chr21:44515221-44515377 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 49-355 |
| Cow position: | chr21:47383598-47383294 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 25, 12 |
| Conread position: | 50-393 |
| Cow position: | chr21:6997905-6998229 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 66, 73 |
| Conread position: | 51-201 |
| Cow position: | chr21:5392574-5392419 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 51-203 |
| Cow position: | chr21:17856508-17856662 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 51-373 |
| Cow position: | chr21:44825919-44825600 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 64, 35 |
| Conread position: | 51-374 |
| Cow position: | chr21:23672716-23673016 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 54-373 |
| Cow position: | chr21:30592335-30592040 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 29 |
| Conread position: | 57-195 |
| Cow position: | chr21:16187836-16187697 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 70, 29 |
| Conread position: | 57-202 |
| Cow position: | chr21:23192542-23192392 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 57-203 |
| Cow position: | chr21:724914-724767 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 70, 126 |
| Conread position: | 57-203 |
| Cow position: | chr21:20192869-20193012 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 57-278 |
| Cow position: | chr21:45262840-45262630 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 8, 28 |
| Conread position: | 57-350 |
| Cow position: | chr21:41155835-41156121 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 70, 31 |
| Conread position: | 57-373 |
| Cow position: | chr21:29002186-29001874 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 56, 159 |
| Conread position: | 58-355 |
| Cow position: | chr21:13488495-13488810 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 59-355 |
| Cow position: | chr21:29214183-29213904 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 204, 16 |
| Conread position: | 59-355 |
| Cow position: | chr21:37299436-37299715 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 64, 8 |
| Conread position: | 59-368 |
| Cow position: | chr21:27569191-27568889 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 53, 26 |
| Conread position: | 59-377 |
| Cow position: | chr21:24858287-24858591 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 62, 138 |
| Conread position: | 61-182 |
| Cow position: | chr21:35899820-35899941 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 61-203 |
| Cow position: | chr21:19363486-19363341 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 61-227 |
| Cow position: | chr21:18041872-18041703 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 61-288 |
| Cow position: | chr21:35569405-35569175 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 102, 49 |
| Conread position: | 61-297 |
| Cow position: | chr21:29484955-29485176 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 56, 130 |
| Conread position: | 61-355 |
| Cow position: | chr21:641562-641839 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 58, 135 |
| Conread position: | 61-355 |
| Cow position: | chr21:13365314-13365620 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 23, 128 |
| Conread position: | 61-355 |
| Cow position: | chr21:34654052-34654325 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 61-355 |
| Cow position: | chr21:45835426-45835135 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 68, 48 |
| Conread position: | 61-356 |
| Cow position: | chr21:33982830-33982558 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 61-358 |
| Cow position: | chr21:8351331-8351036 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 113, 58 |
| Conread position: | 61-375 |
| Cow position: | chr21:11740145-11739840 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 59, 136 |
| Conread position: | 63-195 |
| Cow position: | chr21:10601402-10601265 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 46, 17 |
| Conread position: | 64-352 |
| Cow position: | chr21:29069350-29069071 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 214 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 52, 134 |
| Conread position: | 67-203 |
| Cow position: | chr21:297734-297872 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 50, 44 |
| Conread position: | 67-203 |
| Cow position: | chr21:42540240-42540104 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 60, 18 |
| Conread position: | 67-371 |
| Cow position: | chr21:8426428-8426714 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 60, 52 |
| Conread position: | 67-383 |
| Cow position: | chr21:37479935-37480252 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 227 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 60, 132 |
| Conread position: | 68-343 |
| Cow position: | chr21:829227-828967 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 48, 16 |
| Conread position: | 68-374 |
| Cow position: | chr21:71569-71862 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 47, 18 |
| Conread position: | 76-373 |
| Cow position: | chr21:30980587-30980284 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 43, 113 |
| Conread position: | 88-373 |
| Cow position: | chr21:12104367-12104630 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 38, 109 |
| Conread position: | 121-371 |
| Cow position: | chr21:24875388-24875622 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 57, 80 |
| Conread position: | 122-375 |
| Cow position: | chr21:16498556-16498795 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 235, 66 |
| Conread position: | 200-355 |
| Cow position: | chr21:17856867-17857020 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 209-376 |
| Cow position: | chr21:37495833-37495672 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 210-382 |
| Cow position: | chr21:36398451-36398286 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 211-355 |
| Cow position: | chr21:742390-742529 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 211-355 |
| Cow position: | chr21:44732931-44732788 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 211-368 |
| Cow position: | chr21:28907434-28907280 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 18, 72 |
| Conread position: | 211-372 |
| Cow position: | chr21:27744138-27744305 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 71, 58 |
| Conread position: | 211-375 |
| Cow position: | chr21:8506433-8506273 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 211-375 |
| Cow position: | chr21:8509321-8509161 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 211-377 |
| Cow position: | chr21:40930362-40930198 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 145, 66 |
| Conread position: | 211-384 |
| Cow position: | chr21:16120048-16119883 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 211-394 |
| Cow position: | chr21:27810500-27810684 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 65, 144 |
| Conread position: | 212-367 |
| Cow position: | chr21:40820739-40820583 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 70, 44 |
| Conread position: | 223-355 |
| Cow position: | chr21:37479468-37479335 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
Show alignments to all cow chromosomes.