Cow genome map

Conread name: Ss1.1-rcte22_m17.5

Conread position: 33-373
Cow position: chr22:24903471-24903801 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 241
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 77, 5

Conread position: 44-349
Cow position: chr22:13957755-13957463 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 219
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 12, 26

Conread position: 50-352
Cow position: chr22:9372420-9372711 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 207
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 79, 35

Conread position: 51-397
Cow position: chr22:16621075-16621417 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 225
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 184, 138

Conread position: 55-203
Cow position: chr22:15753285-15753435 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 109
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 56-368
Cow position: chr22:4372941-4373236 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 214
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 64, 112

Conread position: 56-374
Cow position: chr22:6709876-6709580 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 221
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 235, 52

Conread position: 57-203
Cow position: chr22:26141181-26141326 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 63, 113

Conread position: 57-331
Cow position: chr22:4119660-4119399 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 193
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 32, 141

Conread position: 57-349
Cow position: chr22:28058147-28057860 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 189
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 50, 150

Conread position: 57-354
Cow position: chr22:1983757-1984044 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 213
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 220, 53

Conread position: 57-355
Cow position: chr22:26339661-26339952 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 194
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 148, 27

Conread position: 57-355
Cow position: chr22:30699083-30699353 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 207
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 58, 139

Conread position: 57-355
Cow position: chr22:38439251-38438970 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 217
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 56, 27

Conread position: 57-356
Cow position: chr22:27267445-27267743 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 212
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 65, 213

Conread position: 58-258
Cow position: chr22:3993518-3993714 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 58-355
Cow position: chr22:44717618-44717908 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 213
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 48, 118

Conread position: 58-374
Cow position: chr22:33399578-33399280 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 214
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 106, 52

Conread position: 59-355
Cow position: chr22:10161870-10162155 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 209
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 58, 31

Conread position: 59-355
Cow position: chr22:13891475-13891763 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 203
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 164, 51

Conread position: 61-196
Cow position: chr22:21393410-21393275 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 102
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 48, 133

Conread position: 61-201
Cow position: chr22:21502652-21502794 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 53, 25

Conread position: 61-278
Cow position: chr22:25743041-25742836 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 164
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 66, 25

Conread position: 61-294
Cow position: chr22:34104766-34104542 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 166
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 59, 139

Conread position: 61-315
Cow position: chr22:15039273-15039036 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 178
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 24, 0

Conread position: 61-352
Cow position: chr22:39696199-39696482 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 208
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 9, 24

Conread position: 61-355
Cow position: chr22:11613334-11613614 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 213
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 67, 50

Conread position: 61-355
Cow position: chr22:17152590-17152876 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 219
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 198, 24

Conread position: 61-355
Cow position: chr22:18021120-18020843 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 203
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 215, 58

Conread position: 61-355
Cow position: chr22:27171346-27171081 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 202
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 61-361
Cow position: chr22:5616217-5616490 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 211
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 61, 0

Conread position: 61-363
Cow position: chr22:28370852-28371129 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 216
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 51, 120

Conread position: 61-373
Cow position: chr22:2623610-2623300 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 210
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 49, 103

Conread position: 61-373
Cow position: chr22:18838159-18838458 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 221
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 58, 138

Conread position: 61-375
Cow position: chr22:4061038-4060737 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 230
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 9, 74

Conread position: 61-414
Cow position: chr22:39508133-39507794 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 241
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 59, 138

Conread position: 63-192
Cow position: chr22:37086047-37085919 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 63, 19

Conread position: 64-177
Cow position: chr22:41271087-41270976 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 64-203
Cow position: chr22:864605-864465 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 53, 126

Conread position: 64-294
Cow position: chr22:21295814-21295595 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 172
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 52, 105

Conread position: 64-297
Cow position: chr22:845813-846040 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 166
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 62, 133

Conread position: 64-355
Cow position: chr22:12803475-12803200 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 209
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 47, 133

Conread position: 64-372
Cow position: chr22:1659074-1659369 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 220
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 57, 22

Conread position: 64-378
Cow position: chr22:14178913-14178622 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 210
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 65-373
Cow position: chr22:36433062-36432765 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 219
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 16, 128

Conread position: 66-355
Cow position: chr22:16094988-16094718 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 66-373
Cow position: chr22:14214449-14214164 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 212
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 43, 54

Conread position: 67-203
Cow position: chr22:4645688-4645824 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 101
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 67-304
Cow position: chr22:4017392-4017613 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 174
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 42, 55

Conread position: 67-350
Cow position: chr22:8324158-8324431 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 193
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 138, 44

Conread position: 67-368
Cow position: chr22:34441717-34441430 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 223
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 50, 18

Conread position: 67-371
Cow position: chr22:6215644-6215351 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 218
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 49, 129

Conread position: 67-376
Cow position: chr22:27729960-27730252 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 214
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 210, 43

Conread position: 68-277
Cow position: chr22:25387238-25387439 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 54, 132

Conread position: 68-343
Cow position: chr22:41982803-41982543 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 192
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 48, 120

Conread position: 68-355
Cow position: chr22:15568100-15567834 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 208
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 49, 17

Conread position: 69-373
Cow position: chr22:10294954-10295234 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 224
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 42, 121

Conread position: 72-373
Cow position: chr22:20626759-20627036 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 204
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 170, 46

Conread position: 77-354
Cow position: chr22:28146598-28146869 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 189
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 49, 120

Conread position: 81-373
Cow position: chr22:6176361-6176076 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 206
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 36, 90

Conread position: 85-369
Cow position: chr22:1349756-1350035 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 191
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 35, 121

Conread position: 90-368
Cow position: chr22:23440358-23440072 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 193
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 32, 81

Conread position: 111-355
Cow position: chr22:24134365-24134135 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 171
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 8, 78

Conread position: 125-378
Cow position: chr22:4163952-4164189 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 48, 0

Conread position: 130-382
Cow position: chr22:26233611-26233855 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 180
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 144, 13

Conread position: 137-369
Cow position: chr22:16813783-16813999 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 220, 60

Conread position: 211-353
Cow position: chr22:45683993-45683848 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 71, 103

Conread position: 211-355
Cow position: chr22:12573250-12573393 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 106
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 73, 0

Conread position: 211-373
Cow position: chr22:7518601-7518761 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 146, 69

Conread position: 211-373
Cow position: chr22:12902809-12902646 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 130
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 66, 92

Conread position: 211-373
Cow position: chr22:33030844-33031016 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 66, 0

Conread position: 211-376
Cow position: chr22:1776105-1776272 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 211-382
Cow position: chr22:3257616-3257449 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 145, 71

Conread position: 211-382
Cow position: chr22:3937106-3937277 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 122
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 84, 38

Conread position: 211-401
Cow position: chr22:530532-530349 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 134
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 71, 0

Conread position: 211-410
Cow position: chr22:24890267-24890464 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 139
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 147, 66

Conread position: 213-351
Cow position: chr22:7584193-7584059 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 58, 0

Conread position: 213-372
Cow position: chr22:9735317-9735474 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 144, 58

Conread position: 223-373
Cow position: chr22:29546697-29546845 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 134, 42

Show alignments to all cow chromosomes.