Cow genome map
| Conread name: | Ss1.1-rcte22_m17.5 |
| Conread position: | 33-366 |
| Cow position: | chr23:3293577-3293895 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 32, 174 |
| Conread position: | 38-355 |
| Cow position: | chr23:20539274-20539573 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 79, 161 |
| Conread position: | 47-185 |
| Cow position: | chr23:23104819-23104678 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 48-365 |
| Cow position: | chr23:14164497-14164171 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 18 |
| Conread position: | 52-373 |
| Cow position: | chr23:5732455-5732746 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 77, 131 |
| Conread position: | 57-203 |
| Cow position: | chr23:1403894-1403749 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 57-352 |
| Cow position: | chr23:5795388-5795667 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 61, 112 |
| Conread position: | 57-352 |
| Cow position: | chr23:7845203-7845479 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 56, 139 |
| Conread position: | 57-355 |
| Cow position: | chr23:534138-534420 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 218 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 69, 99 |
| Conread position: | 57-355 |
| Cow position: | chr23:16881252-16880976 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 69 |
| Conread position: | 57-355 |
| Cow position: | chr23:38455271-38454969 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 57, 192 |
| Conread position: | 57-381 |
| Cow position: | chr23:1883304-1883613 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 61, 24 |
| Conread position: | 58-384 |
| Cow position: | chr23:2501942-2501634 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 62, 28 |
| Conread position: | 60-355 |
| Cow position: | chr23:4579126-4578840 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 56, 41 |
| Conread position: | 61-203 |
| Cow position: | chr23:17404753-17404896 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 61-276 |
| Cow position: | chr23:24867220-24867426 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 54, 143 |
| Conread position: | 61-298 |
| Cow position: | chr23:21764832-21765057 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 50, 141 |
| Conread position: | 61-347 |
| Cow position: | chr23:21452817-21452546 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 53, 134 |
| Conread position: | 61-373 |
| Cow position: | chr23:29626329-29626640 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 65, 142 |
| Conread position: | 61-394 |
| Cow position: | chr23:12363704-12363384 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 238 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 63, 135 |
| Conread position: | 62-373 |
| Cow position: | chr23:3394580-3394287 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 286, 57 |
| Conread position: | 63-221 |
| Cow position: | chr23:3918181-3918021 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 103 |
| Conread position: | 63-351 |
| Cow position: | chr23:18286108-18286373 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 64, 77 |
| Conread position: | 63-355 |
| Cow position: | chr23:3408994-3408692 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 21 |
| Conread position: | 67-177 |
| Cow position: | chr23:16664652-16664539 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 69-201 |
| Cow position: | chr23:1905970-1906103 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 76-375 |
| Cow position: | chr23:3282194-3281895 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 43, 123 |
| Conread position: | 78-275 |
| Cow position: | chr23:35369114-35368931 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 85-352 |
| Cow position: | chr23:24966526-24966270 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 200 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 28, 108 |
| Conread position: | 125-372 |
| Cow position: | chr23:4844585-4844823 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 126-372 |
| Cow position: | chr23:8698400-8698639 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 147, 71 |
| Conread position: | 131-352 |
| Cow position: | chr23:17597411-17597613 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 124, 58 |
| Conread position: | 142-372 |
| Cow position: | chr23:27848992-27849206 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 215, 58 |
| Conread position: | 209-365 |
| Cow position: | chr23:24809387-24809232 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 148, 62 |
| Conread position: | 211-373 |
| Cow position: | chr23:16664350-16664191 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 145, 66 |
| Conread position: | 211-404 |
| Cow position: | chr23:23104436-23104244 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 164, 60 |
| Conread position: | 213-404 |
| Cow position: | chr23:5603692-5603503 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 144, 58 |
Show alignments to all cow chromosomes.