Cow genome map
| Conread name: | Ss1.1-rcte22_m17.5 |
| Conread position: | 4-355 |
| Cow position: | chr24:230104-230447 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 47, 170 |
| Conread position: | 57-195 |
| Cow position: | chr24:39833628-39833493 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 57-299 |
| Cow position: | chr24:5754722-5754945 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 57-352 |
| Cow position: | chr24:2402484-2402213 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 55, 66 |
| Conread position: | 57-356 |
| Cow position: | chr24:37975097-37974815 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 62, 32 |
| Conread position: | 57-368 |
| Cow position: | chr24:35675429-35675712 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 301, 40 |
| Conread position: | 57-373 |
| Cow position: | chr24:11887044-11887340 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 62, 27 |
| Conread position: | 57-378 |
| Cow position: | chr24:16509855-16510162 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 300, 65 |
| Conread position: | 58-198 |
| Cow position: | chr24:27608216-27608073 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 61-186 |
| Cow position: | chr24:211873-212000 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 61-198 |
| Cow position: | chr24:36404256-36404117 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 59, 49 |
| Conread position: | 61-203 |
| Cow position: | chr24:30897650-30897506 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 61-312 |
| Cow position: | chr24:33222054-33221805 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 65, 141 |
| Conread position: | 61-372 |
| Cow position: | chr24:39791427-39791747 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 64-374 |
| Cow position: | chr24:37037788-37038073 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 52, 132 |
| Conread position: | 67-278 |
| Cow position: | chr24:29063760-29063567 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 67-337 |
| Cow position: | chr24:28990457-28990711 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 49, 19 |
| Conread position: | 67-355 |
| Cow position: | chr24:1269686-1269944 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 216 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 67-373 |
| Cow position: | chr24:30235761-30236057 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 48, 127 |
| Conread position: | 69-186 |
| Cow position: | chr24:6487813-6487932 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 74-290 |
| Cow position: | chr24:28042873-28043080 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 54, 124 |
| Conread position: | 77-351 |
| Cow position: | chr24:37823432-37823687 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 80-401 |
| Cow position: | chr24:20364503-20364205 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 37, 20 |
| Conread position: | 84-348 |
| Cow position: | chr24:27284731-27284984 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 33, 84 |
| Conread position: | 85-369 |
| Cow position: | chr24:15288732-15289011 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 31, 115 |
| Conread position: | 86-373 |
| Cow position: | chr24:28303454-28303175 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 34, 133 |
| Conread position: | 88-355 |
| Cow position: | chr24:2992963-2992713 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 98, 31 |
| Conread position: | 111-375 |
| Cow position: | chr24:5360658-5360897 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 211-355 |
| Cow position: | chr24:21656431-21656577 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 211-355 |
| Cow position: | chr24:25122366-25122504 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 211-364 |
| Cow position: | chr24:36286594-36286746 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 147, 71 |
| Conread position: | 212-377 |
| Cow position: | chr24:27413085-27412925 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 144, 32 |
Show alignments to all cow chromosomes.