Cow genome map
| Conread name: | Ss1.1-rcte22_m17.5 |
| Conread position: | 42-204 |
| Cow position: | chr25:36036885-36036726 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 79, 8 |
| Conread position: | 42-351 |
| Cow position: | chr25:13443518-13443222 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 67, 8 |
| Conread position: | 48-351 |
| Cow position: | chr25:36535536-36535233 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 67, 19 |
| Conread position: | 54-372 |
| Cow position: | chr25:14720650-14720938 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 54-381 |
| Cow position: | chr25:7673193-7673520 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 239 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 49, 123 |
| Conread position: | 56-275 |
| Cow position: | chr25:4947868-4948073 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 71, 44 |
| Conread position: | 57-198 |
| Cow position: | chr25:26642490-26642634 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 57-352 |
| Cow position: | chr25:13272473-13272755 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 59, 142 |
| Conread position: | 57-373 |
| Cow position: | chr25:11051434-11051725 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 69, 124 |
| Conread position: | 57-374 |
| Cow position: | chr25:11433047-11432746 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 27, 146 |
| Conread position: | 58-196 |
| Cow position: | chr25:14118000-14118140 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 58-203 |
| Cow position: | chr25:7449714-7449852 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 58-351 |
| Cow position: | chr25:19364153-19363875 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 138 |
| Conread position: | 60-355 |
| Cow position: | chr25:12510102-12509832 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 56, 70 |
| Conread position: | 61-169 |
| Cow position: | chr25:36033348-36033456 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 62, 77 |
| Conread position: | 61-195 |
| Cow position: | chr25:21193024-21192886 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 94 |
| Conread position: | 61-347 |
| Cow position: | chr25:2624719-2624975 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 61-349 |
| Cow position: | chr25:36872271-36872546 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 9, 51 |
| Conread position: | 61-355 |
| Cow position: | chr25:20785675-20785398 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 216, 49 |
| Conread position: | 61-355 |
| Cow position: | chr25:41151050-41150775 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 193, 13 |
| Conread position: | 61-373 |
| Cow position: | chr25:26679138-26679438 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 57 |
| Conread position: | 61-382 |
| Cow position: | chr25:9843086-9843393 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 57, 24 |
| Conread position: | 61-383 |
| Cow position: | chr25:12609255-12609563 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 60, 17 |
| Conread position: | 61-398 |
| Cow position: | chr25:4521926-4521610 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 293, 53 |
| Conread position: | 62-373 |
| Cow position: | chr25:13621448-13621152 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 58, 48 |
| Conread position: | 63-370 |
| Cow position: | chr25:7799465-7799755 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 207, 47 |
| Conread position: | 64-349 |
| Cow position: | chr25:23245089-23244821 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 64-355 |
| Cow position: | chr25:16319226-16318961 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 49, 20 |
| Conread position: | 64-373 |
| Cow position: | chr25:21191400-21191686 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 59, 133 |
| Conread position: | 67-355 |
| Cow position: | chr25:7007825-7008109 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 41, 131 |
| Conread position: | 67-371 |
| Cow position: | chr25:22178837-22179116 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 287, 25 |
| Conread position: | 67-373 |
| Cow position: | chr25:7750366-7750658 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 50, 137 |
| Conread position: | 67-378 |
| Cow position: | chr25:13566878-13567198 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 55, 159 |
| Conread position: | 68-374 |
| Cow position: | chr25:7641537-7641246 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 48, 91 |
| Conread position: | 70-356 |
| Cow position: | chr25:6683145-6682860 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 57, 133 |
| Conread position: | 76-373 |
| Cow position: | chr25:35826363-35826054 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 118 |
| Conread position: | 77-373 |
| Cow position: | chr25:22261372-22261075 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 128, 23 |
| Conread position: | 83-355 |
| Cow position: | chr25:1840253-1840510 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 44, 117 |
| Conread position: | 85-352 |
| Cow position: | chr25:26306272-26306017 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 45, 114 |
| Conread position: | 98-381 |
| Cow position: | chr25:35762537-35762808 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 22, 60 |
| Conread position: | 112-373 |
| Cow position: | chr25:22348503-22348247 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 6, 86 |
| Conread position: | 113-378 |
| Cow position: | chr25:18288806-18288562 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 157, 59 |
| Conread position: | 113-393 |
| Cow position: | chr25:13222862-13223127 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 254, 87 |
| Conread position: | 211-349 |
| Cow position: | chr25:22571005-22571142 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 211-355 |
| Cow position: | chr25:4157199-4157058 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 211-355 |
| Cow position: | chr25:11956851-11956993 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 211-355 |
| Cow position: | chr25:17141149-17141292 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 211-356 |
| Cow position: | chr25:22734055-22734196 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 211-368 |
| Cow position: | chr25:14210030-14210178 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 211-371 |
| Cow position: | chr25:18934588-18934428 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 146, 60 |
| Conread position: | 211-372 |
| Cow position: | chr25:31657230-31657075 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 211-374 |
| Cow position: | chr25:26072514-26072355 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 212-371 |
| Cow position: | chr25:30709300-30709137 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 213-355 |
| Cow position: | chr25:24115267-24115126 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 213-363 |
| Cow position: | chr25:1802660-1802807 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 214-371 |
| Cow position: | chr25:15999502-15999344 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 86, 49 |
| Conread position: | 215-404 |
| Cow position: | chr25:28940090-28939904 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
Show alignments to all cow chromosomes.