Cow genome map
| Conread name: | Ss1.1-rcte22_m17.5 |
| Conread position: | 50-293 |
| Cow position: | chr28:2960925-2960696 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 66, 23 |
| Conread position: | 51-202 |
| Cow position: | chr28:8022202-8022043 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 51-203 |
| Cow position: | chr28:2862773-2862927 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 68, 50 |
| Conread position: | 56-355 |
| Cow position: | chr28:4181916-4182197 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 57-173 |
| Cow position: | chr28:7608066-7607947 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 57-177 |
| Cow position: | chr28:9285460-9285337 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 57-277 |
| Cow position: | chr28:7865238-7865449 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 75, 143 |
| Conread position: | 57-355 |
| Cow position: | chr28:13474214-13474495 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 259, 63 |
| Conread position: | 57-373 |
| Cow position: | chr28:11426628-11426330 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 67, 78 |
| Conread position: | 58-351 |
| Cow position: | chr28:3914626-3914897 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 57, 141 |
| Conread position: | 58-404 |
| Cow position: | chr28:8787454-8787780 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 80 |
| Conread position: | 59-393 |
| Cow position: | chr28:12964483-12964817 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 68, 141 |
| Conread position: | 61-203 |
| Cow position: | chr28:4588017-4588156 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 65, 25 |
| Conread position: | 61-203 |
| Cow position: | chr28:7549142-7548999 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 61-355 |
| Cow position: | chr28:4158876-4159160 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 216, 14 |
| Conread position: | 61-356 |
| Cow position: | chr28:5577443-5577729 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 213, 83 |
| Conread position: | 61-361 |
| Cow position: | chr28:3740798-3741070 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 61-364 |
| Cow position: | chr28:5204110-5204390 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 49, 134 |
| Conread position: | 61-373 |
| Cow position: | chr28:4884346-4884039 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 71, 144 |
| Conread position: | 61-373 |
| Cow position: | chr28:10589106-10588819 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 63, 136 |
| Conread position: | 61-373 |
| Cow position: | chr28:29989195-29988890 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 135, 23 |
| Conread position: | 61-374 |
| Cow position: | chr28:7350575-7350868 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 305, 61 |
| Conread position: | 64-295 |
| Cow position: | chr28:2132002-2131785 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 64-297 |
| Cow position: | chr28:12070156-12070368 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 60, 22 |
| Conread position: | 64-355 |
| Cow position: | chr28:3492864-3492591 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 48, 106 |
| Conread position: | 64-373 |
| Cow position: | chr28:21868376-21868675 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 227 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 62, 134 |
| Conread position: | 65-280 |
| Cow position: | chr28:5128810-5128605 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 51, 131 |
| Conread position: | 65-406 |
| Cow position: | chr28:4016454-4016772 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 292, 56 |
| Conread position: | 67-194 |
| Cow position: | chr28:10172490-10172366 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 67-199 |
| Cow position: | chr28:7751379-7751246 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 51, 114 |
| Conread position: | 67-206 |
| Cow position: | chr28:5904655-5904794 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 57, 43 |
| Conread position: | 67-355 |
| Cow position: | chr28:24082186-24082466 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 57, 133 |
| Conread position: | 67-355 |
| Cow position: | chr28:25128807-25129080 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 59, 124 |
| Conread position: | 67-372 |
| Cow position: | chr28:25806496-25806807 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 138, 294 |
| Conread position: | 68-373 |
| Cow position: | chr28:9636532-9636242 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 16, 47 |
| Conread position: | 69-298 |
| Cow position: | chr28:11884594-11884383 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 74-372 |
| Cow position: | chr28:21844886-21845165 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 42, 75 |
| Conread position: | 76-373 |
| Cow position: | chr28:11829013-11828745 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 206, 35 |
| Conread position: | 77-355 |
| Cow position: | chr28:4013020-4013279 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 80-355 |
| Cow position: | chr28:25056903-25057152 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 83-355 |
| Cow position: | chr28:777610-777872 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 7, 116 |
| Conread position: | 85-374 |
| Cow position: | chr28:7132134-7131874 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 272, 25 |
| Conread position: | 86-355 |
| Cow position: | chr28:22371742-22371479 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 189 |
| Conread position: | 89-361 |
| Cow position: | chr28:7557777-7557528 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 189, 28 |
| Conread position: | 105-373 |
| Cow position: | chr28:5254836-5255088 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 253, 17 |
| Conread position: | 211-352 |
| Cow position: | chr28:4588372-4588507 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 211-355 |
| Cow position: | chr28:3678416-3678555 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 211-373 |
| Cow position: | chr28:11305579-11305419 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 146, 61 |
| Conread position: | 211-374 |
| Cow position: | chr28:4077292-4077123 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 38 |
| Conread position: | 211-404 |
| Cow position: | chr28:9109270-9109458 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 146, 45 |
| Conread position: | 213-374 |
| Cow position: | chr28:9705706-9705875 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 215-373 |
| Cow position: | chr28:3257046-3257210 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 142, 0 |
Show alignments to all cow chromosomes.