Cow genome map
| Conread name: | Ss1.1-rcte22_m17.5 |
| Conread position: | 50-368 |
| Cow position: | chr29:17109868-17110158 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 307, 47 |
| Conread position: | 52-355 |
| Cow position: | chr29:22714821-22714520 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 57-195 |
| Cow position: | chr29:24578765-24578907 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 57-196 |
| Cow position: | chr29:10456652-10456517 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 57-356 |
| Cow position: | chr29:4480265-4479976 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 27, 34 |
| Conread position: | 57-356 |
| Cow position: | chr29:5063054-5063334 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 208, 62 |
| Conread position: | 59-373 |
| Cow position: | chr29:22162346-22162054 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 7, 141 |
| Conread position: | 61-203 |
| Cow position: | chr29:26615811-26615668 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 61-297 |
| Cow position: | chr29:23243969-23243746 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 82 |
| Conread position: | 61-301 |
| Cow position: | chr29:34773823-34773600 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 169, 50 |
| Conread position: | 61-353 |
| Cow position: | chr29:34359069-34358791 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 61-355 |
| Cow position: | chr29:8926552-8926260 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 55, 23 |
| Conread position: | 61-355 |
| Cow position: | chr29:36530778-36531056 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 63-374 |
| Cow position: | chr29:19949214-19949518 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 238 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 38, 133 |
| Conread position: | 64-203 |
| Cow position: | chr29:17607329-17607470 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 64-203 |
| Cow position: | chr29:27329806-27329945 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 67-355 |
| Cow position: | chr29:12680075-12680348 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 232, 44 |
| Conread position: | 70-203 |
| Cow position: | chr29:18012474-18012610 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 74-355 |
| Cow position: | chr29:28840077-28840363 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 49, 148 |
| Conread position: | 75-373 |
| Cow position: | chr29:23220577-23220278 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 36 |
| Conread position: | 85-292 |
| Cow position: | chr29:38978464-38978656 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 28, 112 |
| Conread position: | 86-367 |
| Cow position: | chr29:31943800-31944070 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 29, 103 |
| Conread position: | 140-355 |
| Cow position: | chr29:19363700-19363898 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 211-355 |
| Cow position: | chr29:40112429-40112569 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 211-364 |
| Cow position: | chr29:36357173-36357327 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 85, 69 |
| Conread position: | 211-372 |
| Cow position: | chr29:22776126-22776282 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 211-374 |
| Cow position: | chr29:28066534-28066689 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 146, 52 |
| Conread position: | 213-363 |
| Cow position: | chr29:33143305-33143157 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 144, 58 |
| Conread position: | 226-361 |
| Cow position: | chr29:38010507-38010640 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
Show alignments to all cow chromosomes.