Cow genome map

Conread name: Ss1.1-rcte22_m17.5

Conread position: 48-278
Cow position: chr3:26219176-26218961 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 163
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 152, 0

Conread position: 48-355
Cow position: chr3:19626635-19626341 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 214
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 17, 149

Conread position: 49-373
Cow position: chr3:21112766-21112457 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 209
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 162, 52

Conread position: 52-355
Cow position: chr3:13353241-13353531 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 209
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 62, 137

Conread position: 54-355
Cow position: chr3:54100839-54100546 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 197
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 151, 55

Conread position: 54-368
Cow position: chr3:67930301-67929990 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 199
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 184, 55

Conread position: 55-373
Cow position: chr3:69785745-69785434 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 223
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 25, 145

Conread position: 57-195
Cow position: chr3:55835940-55835799 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 57-198
Cow position: chr3:59799132-59799273 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 57-288
Cow position: chr3:49327826-49328045 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 167
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 71, 138

Conread position: 57-323
Cow position: chr3:70565853-70565599 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 194
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 78, 68

Conread position: 57-344
Cow position: chr3:74600996-74601268 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 199
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 57, 138

Conread position: 57-351
Cow position: chr3:50768567-50768842 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 214
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 54, 0

Conread position: 57-351
Cow position: chr3:74079754-74079475 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 214
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 63, 138

Conread position: 57-355
Cow position: chr3:18426815-18426533 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 211
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 184, 62

Conread position: 57-355
Cow position: chr3:54946013-54946288 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 207
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 63, 142

Conread position: 57-372
Cow position: chr3:19585746-19586052 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 236
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 70, 133

Conread position: 57-372
Cow position: chr3:78093499-78093209 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 222
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 53, 0

Conread position: 57-373
Cow position: chr3:21015076-21014774 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 210
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 57, 141

Conread position: 57-373
Cow position: chr3:59604735-59605029 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 233
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 70, 23

Conread position: 58-370
Cow position: chr3:74500124-74500438 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 205
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 77, 243

Conread position: 58-382
Cow position: chr3:75479888-75480194 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 220
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 56, 26

Conread position: 59-203
Cow position: chr3:12670729-12670583 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 59, 0

Conread position: 59-343
Cow position: chr3:60264831-60264566 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 207
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 54, 71

Conread position: 59-377
Cow position: chr3:68616440-68616146 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 222
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 58, 106

Conread position: 60-178
Cow position: chr3:70609513-70609637 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 52, 10

Conread position: 61-194
Cow position: chr3:73237082-73237217 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 61-201
Cow position: chr3:10347244-10347381 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 60, 0

Conread position: 61-206
Cow position: chr3:81277810-81277665 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 107
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 61-287
Cow position: chr3:55272158-55271947 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 163
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 65, 135

Conread position: 61-350
Cow position: chr3:3883930-3883658 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 208
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 53, 137

Conread position: 61-352
Cow position: chr3:44932401-44932676 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 214
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 57, 137

Conread position: 61-353
Cow position: chr3:79196648-79196928 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 206
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 56, 24

Conread position: 61-355
Cow position: chr3:23169177-23168901 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 208
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 57, 16

Conread position: 61-355
Cow position: chr3:70899783-70900080 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 202
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 144, 49

Conread position: 61-361
Cow position: chr3:80564852-80565138 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 214
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 48, 83

Conread position: 61-365
Cow position: chr3:55189868-55189572 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 138

Conread position: 61-372
Cow position: chr3:39969979-39969680 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 223
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 23, 131

Conread position: 61-372
Cow position: chr3:76922774-76922489 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 223
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 48, 78

Conread position: 61-373
Cow position: chr3:27274418-27274714 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 221
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 66, 50

Conread position: 61-374
Cow position: chr3:53221903-53222200 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 222
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 111, 27

Conread position: 61-376
Cow position: chr3:10958354-10958056 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 226
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 66, 134

Conread position: 61-396
Cow position: chr3:14601823-14601492 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 217
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 67, 57

Conread position: 62-352
Cow position: chr3:52652192-52651916 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 197
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 116, 0

Conread position: 64-261
Cow position: chr3:28496719-28496909 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 147, 58

Conread position: 64-293
Cow position: chr3:62789288-62789067 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 56, 134

Conread position: 64-374
Cow position: chr3:55177859-55177564 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 229
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 55, 139

Conread position: 64-380
Cow position: chr3:53790645-53790348 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 221
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 54, 80

Conread position: 64-382
Cow position: chr3:57704214-57704529 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 223
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 51, 98

Conread position: 65-298
Cow position: chr3:56059700-56059922 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 179
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 59, 132

Conread position: 67-298
Cow position: chr3:73460858-73461079 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 53, 131

Conread position: 67-351
Cow position: chr3:3316918-3316645 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 205
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 215, 54

Conread position: 67-355
Cow position: chr3:31361313-31361590 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 205
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 51, 6

Conread position: 67-355
Cow position: chr3:45881798-45882066 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 199
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 43, 0

Conread position: 67-355
Cow position: chr3:54506598-54506873 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 210
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 51, 131

Conread position: 67-373
Cow position: chr3:9116922-9117226 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 224
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 61, 39

Conread position: 67-373
Cow position: chr3:66885145-66884842 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 210
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 12, 18

Conread position: 67-374
Cow position: chr3:15951017-15950730 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 224
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 260, 52

Conread position: 67-374
Cow position: chr3:59610826-59610534 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 220
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 59, 30

Conread position: 67-374
Cow position: chr3:80072021-80072333 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 215
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 54, 155

Conread position: 67-384
Cow position: chr3:22165523-22165218 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 231
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 51, 44

Conread position: 68-212
Cow position: chr3:75907276-75907417 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 70-355
Cow position: chr3:78077087-78077357 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 203
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 40, 0

Conread position: 75-373
Cow position: chr3:47753126-47753425 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 213
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 45, 121

Conread position: 76-355
Cow position: chr3:48362980-48363236 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 197
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 44, 0

Conread position: 78-373
Cow position: chr3:49363020-49363292 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 214
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 19, 0

Conread position: 85-370
Cow position: chr3:78092601-78092327 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 210
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 35, 26

Conread position: 88-355
Cow position: chr3:64196739-64196992 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 194
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 41, 111

Conread position: 88-373
Cow position: chr3:10591603-10591327 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 207
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 29, 118

Conread position: 121-373
Cow position: chr3:23132221-23131982 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 183
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 159, 76

Conread position: 124-355
Cow position: chr3:52845501-52845722 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 166
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 19, 51

Conread position: 125-374
Cow position: chr3:75107726-75107960 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 175
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 232, 76

Conread position: 125-382
Cow position: chr3:9120797-9121036 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 177
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 157, 57

Conread position: 211-350
Cow position: chr3:68624242-68624381 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 104
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 82, 69

Conread position: 211-352
Cow position: chr3:2636974-2637109 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 61, 0

Conread position: 211-355
Cow position: chr3:20021294-20021435 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 211-355
Cow position: chr3:75966759-75966615 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 40, 95

Conread position: 211-356
Cow position: chr3:43896035-43895895 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 211-369
Cow position: chr3:77665526-77665372 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 141, 7

Conread position: 211-372
Cow position: chr3:19611327-19611164 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 146, 60

Conread position: 211-373
Cow position: chr3:32248036-32248198 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 50, 38

Conread position: 211-376
Cow position: chr3:77098798-77098635 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 146, 66

Conread position: 211-417
Cow position: chr3:44594646-44594855 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 143
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 69, 184

Conread position: 213-364
Cow position: chr3:74050675-74050530 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 59, 0

Conread position: 213-373
Cow position: chr3:22924348-22924197 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 64, 0

Conread position: 213-374
Cow position: chr3:65237051-65237207 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 215-374
Cow position: chr3:15160549-15160704 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 142, 67

Show alignments to all cow chromosomes.