Cow genome map
| Conread name: | Ss1.1-rcte22_m17.5 |
| Conread position: | 43-382 |
| Cow position: | chr4:27530003-27530326 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 12, 160 |
| Conread position: | 52-369 |
| Cow position: | chr4:32259949-32259642 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 230, 126 |
| Conread position: | 54-296 |
| Cow position: | chr4:65950553-65950794 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 204, 146 |
| Conread position: | 55-406 |
| Cow position: | chr4:14152992-14153349 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 245 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 66, 10 |
| Conread position: | 57-195 |
| Cow position: | chr4:20299174-20299314 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 62, 53 |
| Conread position: | 57-198 |
| Cow position: | chr4:17111976-17111832 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 27, 56 |
| Conread position: | 57-270 |
| Cow position: | chr4:38952453-38952654 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 60, 139 |
| Conread position: | 57-340 |
| Cow position: | chr4:25537446-25537718 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 67, 140 |
| Conread position: | 57-355 |
| Cow position: | chr4:4321099-4320810 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 121, 62 |
| Conread position: | 57-355 |
| Cow position: | chr4:31136652-31136938 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 60, 118 |
| Conread position: | 57-355 |
| Cow position: | chr4:38935257-38935541 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 224 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 68, 141 |
| Conread position: | 57-374 |
| Cow position: | chr4:51898908-51899225 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 94 |
| Conread position: | 59-352 |
| Cow position: | chr4:52823506-52823222 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 59-353 |
| Cow position: | chr4:19097190-19097471 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 67, 123 |
| Conread position: | 59-374 |
| Cow position: | chr4:40414727-40414428 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 68, 143 |
| Conread position: | 61-177 |
| Cow position: | chr4:19463400-19463517 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 61-198 |
| Cow position: | chr4:20139612-20139473 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 61-203 |
| Cow position: | chr4:16799283-16799139 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 61-292 |
| Cow position: | chr4:10379013-10379233 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 136 |
| Conread position: | 61-297 |
| Cow position: | chr4:42921946-42921733 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 61-352 |
| Cow position: | chr4:19700011-19700287 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 216, 49 |
| Conread position: | 61-352 |
| Cow position: | chr4:51727981-51728254 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 58, 137 |
| Conread position: | 61-355 |
| Cow position: | chr4:19408096-19407808 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 9, 144 |
| Conread position: | 61-355 |
| Cow position: | chr4:38944353-38944075 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 60, 115 |
| Conread position: | 61-365 |
| Cow position: | chr4:23847143-23846860 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 297, 46 |
| Conread position: | 61-373 |
| Cow position: | chr4:4085216-4084906 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 31, 52 |
| Conread position: | 61-374 |
| Cow position: | chr4:51851111-51851414 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 56, 30 |
| Conread position: | 61-381 |
| Cow position: | chr4:37915433-37915124 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 55, 111 |
| Conread position: | 61-385 |
| Cow position: | chr4:38157186-38156878 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 61-394 |
| Cow position: | chr4:36290533-36290846 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 243 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 296, 49 |
| Conread position: | 64-355 |
| Cow position: | chr4:52832110-52831832 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 215 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 53, 15 |
| Conread position: | 64-407 |
| Cow position: | chr4:3687831-3688170 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 242 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 60, 35 |
| Conread position: | 67-174 |
| Cow position: | chr4:47047804-47047913 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 67-269 |
| Cow position: | chr4:61897624-61897435 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 53, 44 |
| Conread position: | 67-291 |
| Cow position: | chr4:19323884-19324097 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 67-355 |
| Cow position: | chr4:28772157-28771887 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 58, 26 |
| Conread position: | 67-355 |
| Cow position: | chr4:48152460-48152189 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 215, 114 |
| Conread position: | 67-356 |
| Cow position: | chr4:20027195-20026921 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 55, 131 |
| Conread position: | 67-373 |
| Cow position: | chr4:3421532-3421822 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 61, 9 |
| Conread position: | 67-378 |
| Cow position: | chr4:24810530-24810243 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 186, 43 |
| Conread position: | 67-378 |
| Cow position: | chr4:47730766-47731071 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 61, 136 |
| Conread position: | 67-403 |
| Cow position: | chr4:508997-508685 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 75-369 |
| Cow position: | chr4:48485911-48486194 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 219 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 34, 22 |
| Conread position: | 76-204 |
| Cow position: | chr4:19493472-19493603 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 77-373 |
| Cow position: | chr4:37991518-37991792 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 38, 73 |
| Conread position: | 77-373 |
| Cow position: | chr4:59002213-59001933 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 280, 33 |
| Conread position: | 85-355 |
| Cow position: | chr4:8182711-8182451 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 85-376 |
| Cow position: | chr4:46487914-46487609 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 85-376 |
| Cow position: | chr4:53134521-53134806 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 28, 112 |
| Conread position: | 101-355 |
| Cow position: | chr4:26659242-26659483 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 102-355 |
| Cow position: | chr4:46435268-46435517 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 95 |
| Conread position: | 104-355 |
| Cow position: | chr4:38210030-38209792 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 16, 96 |
| Conread position: | 122-373 |
| Cow position: | chr4:10472155-10472420 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 56, 95 |
| Conread position: | 125-355 |
| Cow position: | chr4:60303046-60302832 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 129-355 |
| Cow position: | chr4:10558509-10558719 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 133-373 |
| Cow position: | chr4:33838823-33838599 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 224, 55 |
| Conread position: | 134-384 |
| Cow position: | chr4:18099084-18098849 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 191, 61 |
| Conread position: | 198-372 |
| Cow position: | chr4:42608766-42608942 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 12, 82 |
| Conread position: | 211-351 |
| Cow position: | chr4:60621554-60621416 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 211-352 |
| Cow position: | chr4:17051244-17051104 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 60, 52 |
| Conread position: | 211-355 |
| Cow position: | chr4:28660509-28660363 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 75, 60 |
| Conread position: | 211-355 |
| Cow position: | chr4:28854233-28854093 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 211-355 |
| Cow position: | chr4:39569245-39569380 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 211-355 |
| Cow position: | chr4:56395554-56395699 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 211-355 |
| Cow position: | chr4:60527222-60527364 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 211-355 |
| Cow position: | chr4:62794322-62794173 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 211-355 |
| Cow position: | chr4:62821014-62820873 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 211-356 |
| Cow position: | chr4:38940901-38940759 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 211-372 |
| Cow position: | chr4:27657018-27657172 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 211-373 |
| Cow position: | chr4:39007546-39007698 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 211-373 |
| Cow position: | chr4:65463467-65463311 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 146, 66 |
| Conread position: | 211-374 |
| Cow position: | chr4:42374114-42373953 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 211-374 |
| Cow position: | chr4:66122325-66122168 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 213-356 |
| Cow position: | chr4:60678020-60678161 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 213-373 |
| Cow position: | chr4:22215467-22215315 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 213-373 |
| Cow position: | chr4:63293503-63293659 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
Show alignments to all cow chromosomes.