Cow genome map
| Conread name: | Ss1.1-rcte22_m17.5 |
| Conread position: | 42-355 |
| Cow position: | chr5:55966956-55966655 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 65, 8 |
| Conread position: | 43-282 |
| Cow position: | chr5:35982819-35982592 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 84, 37 |
| Conread position: | 53-374 |
| Cow position: | chr5:25495419-25495115 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 229, 72 |
| Conread position: | 56-387 |
| Cow position: | chr5:40109424-40109734 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 62, 141 |
| Conread position: | 57-292 |
| Cow position: | chr5:5111141-5110912 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 70, 140 |
| Conread position: | 57-296 |
| Cow position: | chr5:7697939-7698163 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 220, 63 |
| Conread position: | 57-352 |
| Cow position: | chr5:57935175-57934905 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 63, 143 |
| Conread position: | 57-354 |
| Cow position: | chr5:37646008-37646292 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 42 |
| Conread position: | 57-355 |
| Cow position: | chr5:21828800-21829082 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 218 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 65, 144 |
| Conread position: | 57-355 |
| Cow position: | chr5:26467557-26467845 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 57, 133 |
| Conread position: | 57-355 |
| Cow position: | chr5:35969475-35969758 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 225, 28 |
| Conread position: | 57-355 |
| Cow position: | chr5:53842217-53842509 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 108, 61 |
| Conread position: | 57-355 |
| Cow position: | chr5:55955841-55956128 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 52, 149 |
| Conread position: | 57-355 |
| Cow position: | chr5:56070790-56071076 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 140 |
| Conread position: | 57-361 |
| Cow position: | chr5:30629224-30628929 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 29 |
| Conread position: | 57-368 |
| Cow position: | chr5:30253675-30253971 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 57-368 |
| Cow position: | chr5:43402834-43403140 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 58, 143 |
| Conread position: | 57-372 |
| Cow position: | chr5:14314459-14314752 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 61, 142 |
| Conread position: | 57-380 |
| Cow position: | chr5:53835647-53835964 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 63, 144 |
| Conread position: | 59-352 |
| Cow position: | chr5:62172350-62172613 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 61-203 |
| Cow position: | chr5:15598295-15598155 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 57, 24 |
| Conread position: | 61-294 |
| Cow position: | chr5:46509929-46509705 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 65, 135 |
| Conread position: | 61-297 |
| Cow position: | chr5:23168891-23168664 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 67, 137 |
| Conread position: | 61-319 |
| Cow position: | chr5:60183739-60183982 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 52, 136 |
| Conread position: | 61-331 |
| Cow position: | chr5:69461271-69461529 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 9, 22 |
| Conread position: | 61-352 |
| Cow position: | chr5:991404-991689 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 61-352 |
| Cow position: | chr5:65941312-65941035 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 51, 23 |
| Conread position: | 61-355 |
| Cow position: | chr5:7044769-7044488 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 54, 142 |
| Conread position: | 61-355 |
| Cow position: | chr5:44446930-44446657 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 60, 137 |
| Conread position: | 61-355 |
| Cow position: | chr5:50599994-50600264 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 61-355 |
| Cow position: | chr5:59627036-59626754 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 139 |
| Conread position: | 61-373 |
| Cow position: | chr5:22242836-22242536 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 52, 17 |
| Conread position: | 61-373 |
| Cow position: | chr5:57074395-57074098 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 66, 25 |
| Conread position: | 61-374 |
| Cow position: | chr5:30276635-30276925 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 195, 52 |
| Conread position: | 61-374 |
| Cow position: | chr5:45845754-45845448 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 65, 17 |
| Conread position: | 64-344 |
| Cow position: | chr5:65752798-65753067 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 55, 134 |
| Conread position: | 64-355 |
| Cow position: | chr5:17087081-17086799 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 44, 29 |
| Conread position: | 64-355 |
| Cow position: | chr5:21617398-21617673 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 216 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 62, 40 |
| Conread position: | 65-172 |
| Cow position: | chr5:60126313-60126422 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 67-203 |
| Cow position: | chr5:34638828-34638964 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 67-294 |
| Cow position: | chr5:56339074-56338862 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 215, 11 |
| Conread position: | 67-351 |
| Cow position: | chr5:64321696-64321975 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 17, 155 |
| Conread position: | 67-362 |
| Cow position: | chr5:45397516-45397790 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 51, 116 |
| Conread position: | 67-374 |
| Cow position: | chr5:49440928-49440618 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 11 |
| Conread position: | 70-373 |
| Cow position: | chr5:24136660-24136974 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 76-355 |
| Cow position: | chr5:22667032-22667288 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 77-376 |
| Cow position: | chr5:63192788-63192510 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 45 |
| Conread position: | 80-355 |
| Cow position: | chr5:69099675-69099937 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 47, 123 |
| Conread position: | 85-355 |
| Cow position: | chr5:20288302-20288040 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 43, 113 |
| Conread position: | 85-386 |
| Cow position: | chr5:31052347-31052639 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 120, 33 |
| Conread position: | 90-355 |
| Cow position: | chr5:8736323-8736059 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 18, 90 |
| Conread position: | 106-355 |
| Cow position: | chr5:69383238-69383469 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 114-379 |
| Cow position: | chr5:17104844-17105088 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 243, 74 |
| Conread position: | 127-355 |
| Cow position: | chr5:12654907-12654691 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 59, 80 |
| Conread position: | 135-411 |
| Cow position: | chr5:55942367-55942103 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 145, 69 |
| Conread position: | 211-355 |
| Cow position: | chr5:32975833-32975981 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 66, 127 |
| Conread position: | 211-363 |
| Cow position: | chr5:47960186-47960038 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 211-373 |
| Cow position: | chr5:19626653-19626811 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 71, 85 |
| Conread position: | 211-373 |
| Cow position: | chr5:49207252-49207091 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 146, 61 |
| Conread position: | 211-373 |
| Cow position: | chr5:60207783-60207943 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 146, 58 |
| Conread position: | 211-376 |
| Cow position: | chr5:37253504-37253662 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 211-381 |
| Cow position: | chr5:29599471-29599308 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 211-382 |
| Cow position: | chr5:34918421-34918584 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 211-384 |
| Cow position: | chr5:60523807-60523973 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 213-382 |
| Cow position: | chr5:35190187-35190351 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 144, 67 |
| Conread position: | 213-403 |
| Cow position: | chr5:74039926-74039737 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 141, 37 |
| Conread position: | 213-417 |
| Cow position: | chr5:17537596-17537394 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 144, 59 |
| Conread position: | 214-355 |
| Cow position: | chr5:6245585-6245447 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 220-361 |
| Cow position: | chr5:6876882-6876740 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 223-376 |
| Cow position: | chr5:74049911-74050064 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 133, 57 |
Show alignments to all cow chromosomes.