Cow genome map
| Conread name: | Ss1.1-rcte22_m17.5 |
| Conread position: | 35-388 |
| Cow position: | chr6:60144272-60143931 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 101, 20 |
| Conread position: | 48-383 |
| Cow position: | chr6:44566359-44566688 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 118, 22 |
| Conread position: | 48-399 |
| Cow position: | chr6:120184-120515 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 71, 124 |
| Conread position: | 51-373 |
| Cow position: | chr6:24468449-24468148 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 306, 74 |
| Conread position: | 57-195 |
| Cow position: | chr6:61608459-61608598 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 57-195 |
| Cow position: | chr6:67615483-67615344 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 57-203 |
| Cow position: | chr6:1499588-1499737 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 27, 80 |
| Conread position: | 57-203 |
| Cow position: | chr6:60350347-60350198 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 57-278 |
| Cow position: | chr6:66375382-66375177 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 57-310 |
| Cow position: | chr6:16423648-16423894 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 59, 23 |
| Conread position: | 57-337 |
| Cow position: | chr6:26915278-26915541 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 47, 131 |
| Conread position: | 57-355 |
| Cow position: | chr6:25615156-25614859 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 52, 147 |
| Conread position: | 57-361 |
| Cow position: | chr6:37332055-37332350 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 57, 27 |
| Conread position: | 57-371 |
| Cow position: | chr6:19264548-19264250 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 242, 53 |
| Conread position: | 57-373 |
| Cow position: | chr6:13687865-13687568 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 57-373 |
| Cow position: | chr6:51581305-51581004 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 233 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 58, 28 |
| Conread position: | 57-373 |
| Cow position: | chr6:55282339-55282043 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 172, 53 |
| Conread position: | 57-373 |
| Cow position: | chr6:60468185-60468483 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 68, 137 |
| Conread position: | 58-355 |
| Cow position: | chr6:52478465-52478180 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 59, 140 |
| Conread position: | 59-356 |
| Cow position: | chr6:29485038-29485315 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 215 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 59-361 |
| Cow position: | chr6:46860218-46859933 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 60, 52 |
| Conread position: | 59-373 |
| Cow position: | chr6:21231475-21231761 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 60-336 |
| Cow position: | chr6:31078921-31078655 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 151, 48 |
| Conread position: | 61-196 |
| Cow position: | chr6:18961564-18961430 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 55, 121 |
| Conread position: | 61-199 |
| Cow position: | chr6:11192515-11192374 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 61-295 |
| Cow position: | chr6:54991051-54990829 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 52, 66 |
| Conread position: | 61-316 |
| Cow position: | chr6:20098012-20097765 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 58, 138 |
| Conread position: | 61-326 |
| Cow position: | chr6:61269262-61269513 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 53, 136 |
| Conread position: | 61-351 |
| Cow position: | chr6:31535619-31535346 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 53, 135 |
| Conread position: | 61-354 |
| Cow position: | chr6:4383438-4383704 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 61-355 |
| Cow position: | chr6:32287590-32287862 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 80, 137 |
| Conread position: | 61-355 |
| Cow position: | chr6:39358392-39358112 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 53, 23 |
| Conread position: | 61-355 |
| Cow position: | chr6:65870982-65871262 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 60, 141 |
| Conread position: | 61-359 |
| Cow position: | chr6:63720147-63720429 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 50, 139 |
| Conread position: | 61-363 |
| Cow position: | chr6:18118100-18117812 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 66, 126 |
| Conread position: | 61-373 |
| Cow position: | chr6:32867260-32866972 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 61-373 |
| Cow position: | chr6:47574858-47575141 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 293, 136 |
| Conread position: | 61-389 |
| Cow position: | chr6:38207539-38207225 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 72, 37 |
| Conread position: | 63-269 |
| Cow position: | chr6:32853140-32853334 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 53, 117 |
| Conread position: | 64-352 |
| Cow position: | chr6:30123236-30122939 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 36, 193 |
| Conread position: | 64-371 |
| Cow position: | chr6:46465778-46466063 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 179, 50 |
| Conread position: | 64-372 |
| Cow position: | chr6:694192-693895 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 51, 16 |
| Conread position: | 66-348 |
| Cow position: | chr6:32121862-32122119 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 49, 131 |
| Conread position: | 67-198 |
| Cow position: | chr6:1944670-1944802 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 43, 103 |
| Conread position: | 67-203 |
| Cow position: | chr6:36493591-36493447 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 60, 136 |
| Conread position: | 67-213 |
| Cow position: | chr6:24962100-24962249 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 67-269 |
| Cow position: | chr6:47640475-47640286 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 47, 127 |
| Conread position: | 67-281 |
| Cow position: | chr6:28977086-28976881 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 51, 134 |
| Conread position: | 67-294 |
| Cow position: | chr6:7130932-7130707 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 116 |
| Conread position: | 67-355 |
| Cow position: | chr6:17414491-17414219 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 46, 138 |
| Conread position: | 67-382 |
| Cow position: | chr6:7128448-7128147 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 53, 131 |
| Conread position: | 68-355 |
| Cow position: | chr6:10106024-10105752 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 215 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 16, 132 |
| Conread position: | 70-284 |
| Cow position: | chr6:50976011-50976209 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 76-361 |
| Cow position: | chr6:8094324-8094048 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 40, 157 |
| Conread position: | 79-374 |
| Cow position: | chr6:50504423-50504708 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 34, 131 |
| Conread position: | 85-354 |
| Cow position: | chr6:61524231-61523975 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 112 |
| Conread position: | 85-355 |
| Cow position: | chr6:18904077-18903806 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 32, 75 |
| Conread position: | 114-371 |
| Cow position: | chr6:67069810-67069567 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 243, 38 |
| Conread position: | 118-371 |
| Cow position: | chr6:1941823-1941585 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 240, 64 |
| Conread position: | 147-368 |
| Cow position: | chr6:21083503-21083297 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 211-341 |
| Cow position: | chr6:53235564-53235436 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 211-352 |
| Cow position: | chr6:32006366-32006228 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 211-358 |
| Cow position: | chr6:63182377-63182519 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 211-361 |
| Cow position: | chr6:1945044-1945195 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 211-373 |
| Cow position: | chr6:36537272-36537113 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 146, 84 |
| Conread position: | 211-373 |
| Cow position: | chr6:54406711-54406556 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 211-389 |
| Cow position: | chr6:38032946-38033122 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 211-393 |
| Cow position: | chr6:40682577-40682395 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 211-404 |
| Cow position: | chr6:21350944-21350754 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 86, 12 |
| Conread position: | 212-372 |
| Cow position: | chr6:4699797-4699949 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 213-355 |
| Cow position: | chr6:3936873-3937018 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 213-373 |
| Cow position: | chr6:8726768-8726929 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 144, 58 |
| Conread position: | 213-386 |
| Cow position: | chr6:21347060-21346890 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 153, 89 |
Show alignments to all cow chromosomes.