Cow genome map
| Conread name: | Ss1.1-rcte22_m17.5 |
| Conread position: | 47-183 |
| Cow position: | chr7:60869891-60870024 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 48-355 |
| Cow position: | chr7:5199611-5199325 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 18, 143 |
| Conread position: | 54-378 |
| Cow position: | chr7:10943614-10943292 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 24, 101 |
| Conread position: | 55-203 |
| Cow position: | chr7:23761921-23762071 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 61, 16 |
| Conread position: | 57-198 |
| Cow position: | chr7:14353839-14353697 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 57-278 |
| Cow position: | chr7:32915060-32915273 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 155, 115 |
| Conread position: | 57-282 |
| Cow position: | chr7:51319749-51319966 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 67, 52 |
| Conread position: | 57-284 |
| Cow position: | chr7:29121852-29122064 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 32, 66 |
| Conread position: | 57-298 |
| Cow position: | chr7:37361831-37362053 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 57-326 |
| Cow position: | chr7:32222005-32222267 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 67, 10 |
| Conread position: | 57-350 |
| Cow position: | chr7:35300469-35300193 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 215 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 68, 83 |
| Conread position: | 57-352 |
| Cow position: | chr7:32894299-32894009 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 64, 139 |
| Conread position: | 57-352 |
| Cow position: | chr7:60483476-60483202 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 59, 142 |
| Conread position: | 57-355 |
| Cow position: | chr7:8658464-8658747 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 215 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 58, 42 |
| Conread position: | 57-355 |
| Cow position: | chr7:35275130-35274853 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 67, 133 |
| Conread position: | 57-355 |
| Cow position: | chr7:48714802-48715098 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 60, 140 |
| Conread position: | 57-355 |
| Cow position: | chr7:53053455-53053172 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 68, 137 |
| Conread position: | 57-372 |
| Cow position: | chr7:28584197-28584525 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 234 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 130, 229 |
| Conread position: | 57-373 |
| Cow position: | chr7:32260251-32259948 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 73, 27 |
| Conread position: | 57-373 |
| Cow position: | chr7:36665282-36665582 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 220, 53 |
| Conread position: | 57-374 |
| Cow position: | chr7:60732689-60732379 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 60, 134 |
| Conread position: | 57-383 |
| Cow position: | chr7:20534826-20535139 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 59, 24 |
| Conread position: | 61-181 |
| Cow position: | chr7:32819770-32819893 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 61-195 |
| Cow position: | chr7:49751081-49751217 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 61-203 |
| Cow position: | chr7:8102376-8102517 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 55, 70 |
| Conread position: | 61-203 |
| Cow position: | chr7:18288314-18288174 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 63, 111 |
| Conread position: | 61-205 |
| Cow position: | chr7:39904049-39904196 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 17 |
| Conread position: | 61-272 |
| Cow position: | chr7:28544130-28544328 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 63, 135 |
| Conread position: | 61-277 |
| Cow position: | chr7:26631859-26631655 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 57, 50 |
| Conread position: | 61-351 |
| Cow position: | chr7:27079581-27079855 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 57, 46 |
| Conread position: | 61-355 |
| Cow position: | chr7:15569996-15570270 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 31, 59 |
| Conread position: | 61-355 |
| Cow position: | chr7:17750883-17750608 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 61-355 |
| Cow position: | chr7:20168502-20168779 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 63, 138 |
| Conread position: | 61-355 |
| Cow position: | chr7:54013323-54013611 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 55, 76 |
| Conread position: | 61-364 |
| Cow position: | chr7:43484584-43484291 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 56, 119 |
| Conread position: | 61-365 |
| Cow position: | chr7:56886555-56886265 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 221, 134 |
| Conread position: | 61-380 |
| Cow position: | chr7:28917042-28917361 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 52, 137 |
| Conread position: | 64-352 |
| Cow position: | chr7:49106244-49105973 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 213 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 56, 105 |
| Conread position: | 64-352 |
| Cow position: | chr7:57593385-57593655 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 56, 133 |
| Conread position: | 64-355 |
| Cow position: | chr7:4720274-4719993 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 53, 26 |
| Conread position: | 67-186 |
| Cow position: | chr7:21565602-21565482 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 46, 103 |
| Conread position: | 67-319 |
| Cow position: | chr7:18188267-18188039 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 98 |
| Conread position: | 67-355 |
| Cow position: | chr7:42593319-42593031 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 146 |
| Conread position: | 67-356 |
| Cow position: | chr7:39415869-39416140 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 50, 8 |
| Conread position: | 67-361 |
| Cow position: | chr7:17713512-17713222 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 51, 129 |
| Conread position: | 67-373 |
| Cow position: | chr7:26263699-26263400 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 47, 136 |
| Conread position: | 67-388 |
| Cow position: | chr7:47697970-47698287 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 51, 130 |
| Conread position: | 68-351 |
| Cow position: | chr7:34422307-34422024 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 54, 112 |
| Conread position: | 68-373 |
| Cow position: | chr7:12495148-12494867 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 289, 42 |
| Conread position: | 69-342 |
| Cow position: | chr7:50493954-50494217 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 53, 129 |
| Conread position: | 70-374 |
| Cow position: | chr7:21008977-21008669 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 75-368 |
| Cow position: | chr7:8089129-8089409 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 34, 118 |
| Conread position: | 85-294 |
| Cow position: | chr7:49405268-49405460 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 103-355 |
| Cow position: | chr7:20968413-20968657 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 32, 22 |
| Conread position: | 108-331 |
| Cow position: | chr7:11487671-11487462 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 9, 15 |
| Conread position: | 108-355 |
| Cow position: | chr7:31523547-31523779 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 111-352 |
| Cow position: | chr7:36284697-36284928 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 121-355 |
| Cow position: | chr7:6469635-6469859 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 152, 75 |
| Conread position: | 135-368 |
| Cow position: | chr7:62498021-62497807 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 152-352 |
| Cow position: | chr7:11054596-11054784 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 144, 45 |
| Conread position: | 211-355 |
| Cow position: | chr7:10441877-10441736 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 211-355 |
| Cow position: | chr7:39988825-39988966 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 211-367 |
| Cow position: | chr7:23671843-23672000 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 143, 71 |
| Conread position: | 211-373 |
| Cow position: | chr7:6801867-6802035 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 211-382 |
| Cow position: | chr7:35793166-35793340 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 58, 126 |
| Conread position: | 211-400 |
| Cow position: | chr7:51621489-51621670 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 146, 66 |
| Conread position: | 211-412 |
| Cow position: | chr7:11784953-11784753 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 146, 66 |
| Conread position: | 212-355 |
| Cow position: | chr7:12918488-12918349 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 90, 0 |
Show alignments to all cow chromosomes.