Cow genome map
| Conread name: | Ss1.1-rcte22_m17.5 |
| Conread position: | 35-355 |
| Cow position: | chr8:16957524-16957813 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 9, 77 |
| Conread position: | 39-176 |
| Cow position: | chr8:1086166-1086031 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 39-203 |
| Cow position: | chr8:1182964-1183126 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 42-284 |
| Cow position: | chr8:15856870-15857106 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 17, 164 |
| Conread position: | 49-361 |
| Cow position: | chr8:18728696-18728991 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 71, 98 |
| Conread position: | 50-355 |
| Cow position: | chr8:61157325-61157029 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 64, 152 |
| Conread position: | 57-286 |
| Cow position: | chr8:6485014-6484793 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 69, 54 |
| Conread position: | 57-351 |
| Cow position: | chr8:55884890-55885170 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 56, 43 |
| Conread position: | 57-352 |
| Cow position: | chr8:32332569-32332272 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 70, 139 |
| Conread position: | 57-352 |
| Cow position: | chr8:39807513-39807799 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 62, 23 |
| Conread position: | 57-355 |
| Cow position: | chr8:14383270-14382971 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 70, 43 |
| Conread position: | 57-355 |
| Cow position: | chr8:29030180-29029876 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 234 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 27, 153 |
| Conread position: | 57-356 |
| Cow position: | chr8:1303824-1304109 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 60, 128 |
| Conread position: | 57-368 |
| Cow position: | chr8:12213932-12214215 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 301, 40 |
| Conread position: | 57-370 |
| Cow position: | chr8:37636074-37635779 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 229 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 70, 51 |
| Conread position: | 57-373 |
| Cow position: | chr8:8190147-8189834 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 58, 144 |
| Conread position: | 57-373 |
| Cow position: | chr8:29262694-29263029 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 57, 179 |
| Conread position: | 58-361 |
| Cow position: | chr8:6224516-6224232 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 58, 131 |
| Conread position: | 59-374 |
| Cow position: | chr8:49305825-49305523 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 79, 23 |
| Conread position: | 59-375 |
| Cow position: | chr8:37391438-37391135 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 11, 24 |
| Conread position: | 60-355 |
| Cow position: | chr8:31985183-31985460 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 54, 137 |
| Conread position: | 60-372 |
| Cow position: | chr8:47169864-47170167 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 57, 137 |
| Conread position: | 61-198 |
| Cow position: | chr8:3339008-3339139 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 17, 51 |
| Conread position: | 61-198 |
| Cow position: | chr8:5979864-5980003 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 61-198 |
| Cow position: | chr8:12814807-12814945 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 61-284 |
| Cow position: | chr8:4924491-4924700 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 61-318 |
| Cow position: | chr8:45447179-45446937 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 55, 139 |
| Conread position: | 61-326 |
| Cow position: | chr8:35580713-35580463 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 52, 25 |
| Conread position: | 61-351 |
| Cow position: | chr8:10970753-10971033 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 52, 140 |
| Conread position: | 61-355 |
| Cow position: | chr8:46082090-46082366 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 65, 130 |
| Conread position: | 61-356 |
| Cow position: | chr8:55716675-55716954 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 65, 129 |
| Conread position: | 61-373 |
| Cow position: | chr8:20107861-20107573 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 296, 64 |
| Conread position: | 61-373 |
| Cow position: | chr8:24371794-24371491 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 55, 137 |
| Conread position: | 61-375 |
| Cow position: | chr8:42762508-42762212 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 227 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 52, 68 |
| Conread position: | 61-392 |
| Cow position: | chr8:31297190-31297515 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 286, 64 |
| Conread position: | 62-379 |
| Cow position: | chr8:24867820-24867520 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 52, 135 |
| Conread position: | 63-351 |
| Cow position: | chr8:41219252-41219527 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 54, 21 |
| Conread position: | 64-198 |
| Cow position: | chr8:33974483-33974619 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 64-294 |
| Cow position: | chr8:16031648-16031439 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 64-297 |
| Cow position: | chr8:17167492-17167715 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 51, 26 |
| Conread position: | 64-355 |
| Cow position: | chr8:32621066-32620777 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 224 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 52, 144 |
| Conread position: | 64-361 |
| Cow position: | chr8:32130162-32130439 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 64-373 |
| Cow position: | chr8:28987624-28987943 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 67-204 |
| Cow position: | chr8:20355241-20355103 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 55, 16 |
| Conread position: | 67-275 |
| Cow position: | chr8:55871773-55871572 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 130 |
| Conread position: | 67-293 |
| Cow position: | chr8:39174317-39174101 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 49, 131 |
| Conread position: | 67-352 |
| Cow position: | chr8:33640291-33640562 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 74, 58 |
| Conread position: | 67-361 |
| Cow position: | chr8:33406921-33406647 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 59, 133 |
| Conread position: | 67-371 |
| Cow position: | chr8:48528035-48527746 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 68-364 |
| Cow position: | chr8:38572341-38572059 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 36, 125 |
| Conread position: | 69-376 |
| Cow position: | chr8:53746647-53746347 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 52, 32 |
| Conread position: | 76-376 |
| Cow position: | chr8:10337100-10336820 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 79-368 |
| Cow position: | chr8:37671984-37672264 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 139, 31 |
| Conread position: | 85-352 |
| Cow position: | chr8:5437708-5437960 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 27, 114 |
| Conread position: | 85-374 |
| Cow position: | chr8:55089904-55089635 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 32, 114 |
| Conread position: | 86-373 |
| Cow position: | chr8:58393509-58393775 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 26, 112 |
| Conread position: | 122-373 |
| Cow position: | chr8:43153706-43153452 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 160, 75 |
| Conread position: | 130-372 |
| Cow position: | chr8:48555664-48555442 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 228, 50 |
| Conread position: | 130-373 |
| Cow position: | chr8:24905457-24905701 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 144, 65 |
| Conread position: | 210-376 |
| Cow position: | chr8:16061127-16061295 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 72, 146 |
| Conread position: | 211-351 |
| Cow position: | chr8:35936825-35936960 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 211-352 |
| Cow position: | chr8:6675254-6675393 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 211-355 |
| Cow position: | chr8:29173269-29173409 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 211-370 |
| Cow position: | chr8:5730092-5730249 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 146, 75 |
| Conread position: | 211-374 |
| Cow position: | chr8:51501226-51501066 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 213-355 |
| Cow position: | chr8:30868670-30868527 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 213-368 |
| Cow position: | chr8:28210044-28210203 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 213-403 |
| Cow position: | chr8:61848665-61848477 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 144, 57 |
| Conread position: | 216-372 |
| Cow position: | chr8:6160837-6160993 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 63 |
Show alignments to all cow chromosomes.