Cow genome map
| Conread name: | Ss1.1-rcte22_m17.5 |
| Conread position: | 42-349 |
| Cow position: | chr9:38846207-38846497 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 68 |
| Conread position: | 57-165 |
| Cow position: | chr9:42509235-42509129 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 57-355 |
| Cow position: | chr9:5263622-5263342 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 59, 137 |
| Conread position: | 57-355 |
| Cow position: | chr9:5500978-5500702 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 48, 113 |
| Conread position: | 57-355 |
| Cow position: | chr9:18380983-18380706 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 60, 87 |
| Conread position: | 57-355 |
| Cow position: | chr9:24887320-24887043 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 57-355 |
| Cow position: | chr9:26344847-26345124 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 53 |
| Conread position: | 57-368 |
| Cow position: | chr9:28726600-28726908 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 58, 147 |
| Conread position: | 57-374 |
| Cow position: | chr9:6933953-6934266 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 220, 121 |
| Conread position: | 58-372 |
| Cow position: | chr9:43757657-43757364 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 296, 26 |
| Conread position: | 59-376 |
| Cow position: | chr9:45285409-45285724 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 240 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 56, 8 |
| Conread position: | 61-198 |
| Cow position: | chr9:6596118-6596256 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 61-198 |
| Cow position: | chr9:49293029-49293163 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 61-278 |
| Cow position: | chr9:7634390-7634184 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 57, 137 |
| Conread position: | 61-293 |
| Cow position: | chr9:31078966-31079180 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 61-347 |
| Cow position: | chr9:29006679-29006405 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 56, 138 |
| Conread position: | 61-350 |
| Cow position: | chr9:12910285-12910557 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 61-355 |
| Cow position: | chr9:6192345-6192619 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 61-355 |
| Cow position: | chr9:9595838-9596112 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 61-355 |
| Cow position: | chr9:33584566-33584846 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 215 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 64, 82 |
| Conread position: | 61-355 |
| Cow position: | chr9:36490775-36491066 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 46, 146 |
| Conread position: | 61-355 |
| Cow position: | chr9:48628145-48627861 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 66, 23 |
| Conread position: | 61-355 |
| Cow position: | chr9:51620554-51620282 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 61-358 |
| Cow position: | chr9:34957938-34958217 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 222 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 61, 12 |
| Conread position: | 61-361 |
| Cow position: | chr9:33119769-33120060 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 61, 136 |
| Conread position: | 61-372 |
| Cow position: | chr9:13169545-13169845 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 59, 69 |
| Conread position: | 61-373 |
| Cow position: | chr9:28747406-28747700 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 296, 56 |
| Conread position: | 61-373 |
| Cow position: | chr9:53109369-53109067 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 66, 125 |
| Conread position: | 62-349 |
| Cow position: | chr9:56773197-56772905 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 5, 52 |
| Conread position: | 64-205 |
| Cow position: | chr9:43875600-43875744 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 64-355 |
| Cow position: | chr9:9403062-9403333 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 67-198 |
| Cow position: | chr9:44831944-44832074 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 11 |
| Conread position: | 67-352 |
| Cow position: | chr9:41728369-41728101 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 67-355 |
| Cow position: | chr9:26279061-26279335 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 215, 54 |
| Conread position: | 67-372 |
| Cow position: | chr9:20091158-20090881 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 60, 43 |
| Conread position: | 67-373 |
| Cow position: | chr9:34286913-34286616 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 225 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 59, 131 |
| Conread position: | 68-203 |
| Cow position: | chr9:28754929-28754792 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 69-350 |
| Cow position: | chr9:64106015-64105746 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 122 |
| Conread position: | 70-275 |
| Cow position: | chr9:5763524-5763714 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 53, 108 |
| Conread position: | 74-297 |
| Cow position: | chr9:5219065-5219277 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 124 |
| Conread position: | 77-352 |
| Cow position: | chr9:9460076-9459830 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 89, 36 |
| Conread position: | 85-355 |
| Cow position: | chr9:17840582-17840841 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 34, 113 |
| Conread position: | 85-361 |
| Cow position: | chr9:34374837-34375096 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 197, 12 |
| Conread position: | 85-371 |
| Cow position: | chr9:8628823-8629091 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 39, 102 |
| Conread position: | 86-361 |
| Cow position: | chr9:37199215-37198959 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 88-375 |
| Cow position: | chr9:33823209-33822938 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 30, 7 |
| Conread position: | 90-350 |
| Cow position: | chr9:34024789-34024542 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 37, 109 |
| Conread position: | 111-382 |
| Cow position: | chr9:8562888-8562614 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 19, 74 |
| Conread position: | 112-349 |
| Cow position: | chr9:57131561-57131342 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 124-383 |
| Cow position: | chr9:53390131-53390398 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 42, 70 |
| Conread position: | 130-355 |
| Cow position: | chr9:9495218-9494997 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 136-358 |
| Cow position: | chr9:22165671-22165882 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 127, 61 |
| Conread position: | 211-351 |
| Cow position: | chr9:26394369-26394506 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 211-352 |
| Cow position: | chr9:30194991-30194852 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 211-355 |
| Cow position: | chr9:12269010-12268873 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 211-355 |
| Cow position: | chr9:19771342-19771198 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 129, 60 |
| Conread position: | 211-355 |
| Cow position: | chr9:32052256-32052114 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 106, 60 |
| Conread position: | 211-356 |
| Cow position: | chr9:61022603-61022458 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 211-365 |
| Cow position: | chr9:45740162-45740316 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 211-368 |
| Cow position: | chr9:40603648-40603490 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 142, 69 |
| Conread position: | 211-372 |
| Cow position: | chr9:11098472-11098634 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 146, 60 |
| Conread position: | 211-374 |
| Cow position: | chr9:19718360-19718518 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 146, 68 |
| Conread position: | 211-384 |
| Cow position: | chr9:28773119-28772948 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 146, 52 |
| Conread position: | 213-351 |
| Cow position: | chr9:1712728-1712866 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 64, 50 |
| Conread position: | 213-356 |
| Cow position: | chr9:4244406-4244262 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 213-356 |
| Cow position: | chr9:53323806-53323950 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 217-361 |
| Cow position: | chr9:31346924-31346780 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 141, 65 |
Show alignments to all cow chromosomes.