Cow genome map
| Conread name: | Ss1.1-rcte22_m17.5 |
| Conread position: | 51-394 |
| Cow position: | chrX:5134404-5134733 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 245, 90 |
| Conread position: | 57-326 |
| Cow position: | chrX:6413983-6414229 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 57-355 |
| Cow position: | chrX:11656027-11656298 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 57-355 |
| Cow position: | chrX:26881633-26881342 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 222 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 58, 148 |
| Conread position: | 57-372 |
| Cow position: | chrX:31311964-31312293 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 52, 19 |
| Conread position: | 57-373 |
| Cow position: | chrX:41871000-41871296 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 61, 140 |
| Conread position: | 57-378 |
| Cow position: | chrX:37781176-37780872 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 70, 140 |
| Conread position: | 58-186 |
| Cow position: | chrX:18273122-18272991 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 58-349 |
| Cow position: | chrX:34313965-34314235 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 58-355 |
| Cow position: | chrX:14884022-14883737 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 68, 143 |
| Conread position: | 58-376 |
| Cow position: | chrX:29723678-29723993 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 148, 52 |
| Conread position: | 61-175 |
| Cow position: | chrX:5677953-5677838 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 61-203 |
| Cow position: | chrX:35224235-35224377 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 61-274 |
| Cow position: | chrX:45648812-45649022 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 51, 13 |
| Conread position: | 61-294 |
| Cow position: | chrX:5135587-5135364 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 142 |
| Conread position: | 61-295 |
| Cow position: | chrX:40557742-40557519 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 56, 136 |
| Conread position: | 61-297 |
| Cow position: | chrX:17725913-17726139 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 65, 135 |
| Conread position: | 61-327 |
| Cow position: | chrX:34532460-34532710 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 56, 23 |
| Conread position: | 61-355 |
| Cow position: | chrX:616323-616019 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 59, 164 |
| Conread position: | 61-355 |
| Cow position: | chrX:9252223-9251943 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 61-366 |
| Cow position: | chrX:31436416-31436700 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 222 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 9, 23 |
| Conread position: | 61-371 |
| Cow position: | chrX:34411781-34412086 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 59, 140 |
| Conread position: | 61-373 |
| Cow position: | chrX:20584263-20584547 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 227 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 56, 138 |
| Conread position: | 61-374 |
| Cow position: | chrX:4153096-4152802 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 48, 138 |
| Conread position: | 61-376 |
| Cow position: | chrX:42381163-42380871 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 221, 50 |
| Conread position: | 61-382 |
| Cow position: | chrX:30338007-30337706 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 223, 50 |
| Conread position: | 64-269 |
| Cow position: | chrX:37232355-37232541 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 64-355 |
| Cow position: | chrX:42927877-42927610 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 64-368 |
| Cow position: | chrX:40269430-40269739 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 62, 162 |
| Conread position: | 64-373 |
| Cow position: | chrX:46291080-46291381 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 50, 34 |
| Conread position: | 67-195 |
| Cow position: | chrX:13785418-13785287 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 67-203 |
| Cow position: | chrX:619059-618921 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 67-275 |
| Cow position: | chrX:46429875-46429679 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 61, 11 |
| Conread position: | 67-355 |
| Cow position: | chrX:1466106-1466383 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 129 |
| Conread position: | 67-355 |
| Cow position: | chrX:7695688-7695983 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 31, 131 |
| Conread position: | 67-355 |
| Cow position: | chrX:22074739-22075015 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 46, 132 |
| Conread position: | 67-360 |
| Cow position: | chrX:29050192-29050468 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 224 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 61, 117 |
| Conread position: | 67-379 |
| Cow position: | chrX:40685386-40685089 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 57, 130 |
| Conread position: | 67-384 |
| Cow position: | chrX:22115371-22115063 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 55 |
| Conread position: | 67-388 |
| Cow position: | chrX:9201495-9201795 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 260, 55 |
| Conread position: | 68-373 |
| Cow position: | chrX:5919436-5919728 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 47, 120 |
| Conread position: | 68-382 |
| Cow position: | chrX:35985764-35986065 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 49, 107 |
| Conread position: | 72-373 |
| Cow position: | chrX:20957198-20957479 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 203, 38 |
| Conread position: | 78-373 |
| Cow position: | chrX:17794931-17795222 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 43, 123 |
| Conread position: | 85-374 |
| Cow position: | chrX:24749050-24749322 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 35, 98 |
| Conread position: | 85-381 |
| Cow position: | chrX:19394515-19394803 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 38, 113 |
| Conread position: | 86-373 |
| Cow position: | chrX:40532080-40531788 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 41, 160 |
| Conread position: | 88-355 |
| Cow position: | chrX:28940212-28940464 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 89-355 |
| Cow position: | chrX:22482732-22482469 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 36, 22 |
| Conread position: | 104-334 |
| Cow position: | chrX:24633665-24633893 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 20, 7 |
| Conread position: | 112-371 |
| Cow position: | chrX:16836296-16836057 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 242, 76 |
| Conread position: | 121-374 |
| Cow position: | chrX:27668959-27668722 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 236, 80 |
| Conread position: | 122-379 |
| Cow position: | chrX:39290359-39290603 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 204, 75 |
| Conread position: | 125-355 |
| Cow position: | chrX:2935960-2936173 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 125-355 |
| Cow position: | chrX:10252195-10251982 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 44, 64 |
| Conread position: | 207-373 |
| Cow position: | chrX:42216558-42216395 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 5, 26 |
| Conread position: | 211-352 |
| Cow position: | chrX:6480520-6480378 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 211-352 |
| Cow position: | chrX:23471790-23471651 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 211-355 |
| Cow position: | chrX:4486948-4486804 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 211-355 |
| Cow position: | chrX:14135754-14135895 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 211-355 |
| Cow position: | chrX:40556383-40556243 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 61 |
| Conread position: | 211-363 |
| Cow position: | chrX:42875288-42875439 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 146, 71 |
| Conread position: | 211-372 |
| Cow position: | chrX:31480044-31480203 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 211-373 |
| Cow position: | chrX:31983509-31983336 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 211-393 |
| Cow position: | chrX:34991440-34991618 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 146, 60 |
| Conread position: | 212-383 |
| Cow position: | chrX:29682034-29681866 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 145, 53 |
| Conread position: | 213-363 |
| Cow position: | chrX:11602407-11602258 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 69, 120 |
| Conread position: | 213-373 |
| Cow position: | chrX:11589289-11589128 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 83, 58 |
| Conread position: | 213-374 |
| Cow position: | chrX:23359036-23358876 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 144, 69 |
| Conread position: | 214-352 |
| Cow position: | chrX:31279845-31279710 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 223-373 |
| Cow position: | chrX:4399207-4399357 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 35, 27 |
Show alignments to all cow chromosomes.