Cow genome map
| Conread name: | Ss1.1-rdbla0127_j23.5.5 |
| Conread position: | 179-798 |
| Cow position: | chr10:8996520-8995894 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 54 |
| Conread position: | 179-798 |
| Cow position: | chr10:9031489-9032107 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 368 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 9, 119 |
| Conread position: | 189-1018 |
| Cow position: | chr10:8996845-8996001 (view UCSC Genome Browser custom track) |
| Alignm length: | 849 |
| Alignm identity: | 575 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 280-674 |
| Cow position: | chr10:9031267-9031664 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 227 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 16, 28 |
| Conread position: | 281-904 |
| Cow position: | chr10:9010469-9009843 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 279 |
| Conread position: | 285-789 |
| Cow position: | chr10:21939137-21938633 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 328 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 10, 18 |
| Conread position: | 308-986 |
| Cow position: | chr10:9010523-9009845 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 97 |
| Conread position: | 320-1085 |
| Cow position: | chr10:8996783-8996018 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 324-1197 |
| Cow position: | chr10:8996863-8995989 (view UCSC Genome Browser custom track) |
| Alignm length: | 879 |
| Alignm identity: | 594 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 12 |
| Conread position: | 356-758 |
| Cow position: | chr10:9031262-9031664 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 37, 48 |
| Conread position: | 365-957 |
| Cow position: | chr10:21939222-21938633 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 45 |
| Conread position: | 365-1051 |
| Cow position: | chr10:9010550-9009864 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 104 |
| Conread position: | 366-873 |
| Cow position: | chr10:21939137-21938633 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 106 |
| Conread position: | 371-1288 |
| Cow position: | chr10:8996900-8995984 (view UCSC Genome Browser custom track) |
| Alignm length: | 920 |
| Alignm identity: | 611 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 118 |
| Conread position: | 412-1137 |
| Cow position: | chr10:9010585-9009862 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 24 |
| Conread position: | 426-842 |
| Cow position: | chr10:9031248-9031664 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 239 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 48, 63 |
| Conread position: | 449-1043 |
| Cow position: | chr10:21939222-21938631 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 23 |
| Conread position: | 490-1170 |
| Cow position: | chr10:9031228-9031890 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 604, 366 |
| Conread position: | 525-1188 |
| Cow position: | chr10:8996914-8996251 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 533-1128 |
| Cow position: | chr10:21939376-21938795 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 370 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 40, 25 |
| Conread position: | 572-1176 |
| Cow position: | chr10:9010511-9009907 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 591-1177 |
| Cow position: | chr10:9010574-9009990 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 383, 13 |
| Conread position: | 617-1173 |
| Cow position: | chr10:21939376-21938834 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 352 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 124, 119 |
| Conread position: | 699-1279 |
| Cow position: | chr10:21939378-21938812 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 342 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 354, 156 |
| Conread position: | 829-1177 |
| Cow position: | chr10:9010589-9010242 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 284, 5 |
| Conread position: | 846-1188 |
| Cow position: | chr10:9031248-9031590 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 228 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 913-1271 |
| Cow position: | chr10:9031231-9031589 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 265, 313 |
Show alignments to all cow chromosomes.