Cow genome map
| Conread name: | Ss1.1-rdbla0127_j23.5.5 |
| Conread position: | 188-1161 |
| Cow position: | chr13:24162654-24163642 (view UCSC Genome Browser custom track) |
| Alignm length: | 995 |
| Alignm identity: | 577 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 51, 142 |
| Conread position: | 200-1281 |
| Cow position: | chr13:56292849-56291760 (view UCSC Genome Browser custom track) |
| Alignm length: | 1110 |
| Alignm identity: | 682 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 279-1169 |
| Cow position: | chr13:22124947-22125840 (view UCSC Genome Browser custom track) |
| Alignm length: | 896 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 624 |
| Conread position: | 280-1177 |
| Cow position: | chr13:39984003-39984903 (view UCSC Genome Browser custom track) |
| Alignm length: | 902 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 798 |
| Conread position: | 281-872 |
| Cow position: | chr13:39930584-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 354 |
| Conread position: | 281-1161 |
| Cow position: | chr13:22125033-22125916 (view UCSC Genome Browser custom track) |
| Alignm length: | 890 |
| Alignm identity: | 516 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 43, 38 |
| Conread position: | 287-752 |
| Cow position: | chr13:56317372-56317834 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 290 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 6, 113 |
| Conread position: | 314-1169 |
| Cow position: | chr13:22124733-22125588 (view UCSC Genome Browser custom track) |
| Alignm length: | 860 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 91 |
| Conread position: | 314-1169 |
| Cow position: | chr13:24162459-24163314 (view UCSC Genome Browser custom track) |
| Alignm length: | 859 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 358 |
| Conread position: | 320-883 |
| Cow position: | chr13:56333694-56334266 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 146 |
| Conread position: | 335-1245 |
| Cow position: | chr13:39983808-39984720 (view UCSC Genome Browser custom track) |
| Alignm length: | 916 |
| Alignm identity: | 570 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 30 |
| Conread position: | 337-1269 |
| Cow position: | chr13:39983979-39984913 (view UCSC Genome Browser custom track) |
| Alignm length: | 939 |
| Alignm identity: | 601 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 824, 801 |
| Conread position: | 347-600 |
| Cow position: | chr13:56334066-56334319 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 46, 58 |
| Conread position: | 371-1022 |
| Cow position: | chr13:56333661-56334321 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 34 |
| Conread position: | 381-1188 |
| Cow position: | chr13:56333503-56334319 (view UCSC Genome Browser custom track) |
| Alignm length: | 820 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 102 |
| Conread position: | 415-755 |
| Cow position: | chr13:56317941-56318287 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 56, 66 |
| Conread position: | 415-912 |
| Cow position: | chr13:29183667-29183183 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 316 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 104, 98 |
| Conread position: | 415-1273 |
| Cow position: | chr13:39983973-39984832 (view UCSC Genome Browser custom track) |
| Alignm length: | 864 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 52 |
| Conread position: | 425-956 |
| Cow position: | chr13:39930647-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 207 |
| Conread position: | 436-872 |
| Cow position: | chr13:56317357-56317785 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 38, 45 |
| Conread position: | 446-1167 |
| Cow position: | chr13:22124697-22125418 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 416 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 400, 394 |
| Conread position: | 446-1167 |
| Cow position: | chr13:24162423-24163144 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 418 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 400, 394 |
| Conread position: | 480-1040 |
| Cow position: | chr13:39930618-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 152 |
| Conread position: | 487-882 |
| Cow position: | chr13:56317929-56318330 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 66, 72 |
| Conread position: | 490-1135 |
| Cow position: | chr13:56292879-56292234 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 393 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 306, 25 |
| Conread position: | 492-1219 |
| Cow position: | chr13:56333532-56334267 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 15 |
| Conread position: | 530-1124 |
| Cow position: | chr13:39930584-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 102 |
| Conread position: | 583-1273 |
| Cow position: | chr13:39983721-39984412 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 50 |
| Conread position: | 614-1169 |
| Cow position: | chr13:39930584-39931139 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 368 |
| Conread position: | 628-1169 |
| Cow position: | chr13:24162437-24162978 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 321 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 101, 92 |
| Conread position: | 659-1273 |
| Cow position: | chr13:39983713-39984328 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 372 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 74, 62 |
| Conread position: | 698-1176 |
| Cow position: | chr13:39930584-39931062 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 307 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 91, 100 |
Show alignments to all cow chromosomes.