Cow genome map
| Conread name: | Ss1.1-rdbla0127_j23.5.5 |
| Conread position: | 176-929 |
| Cow position: | chr19:23649712-23650481 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 317 |
| Conread position: | 176-1136 |
| Cow position: | chr19:20677435-20678413 (view UCSC Genome Browser custom track) |
| Alignm length: | 982 |
| Alignm identity: | 636 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 595 |
| Conread position: | 179-1018 |
| Cow position: | chr19:23614265-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 862 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 315 |
| Conread position: | 179-1137 |
| Cow position: | chr19:23614097-23615071 (view UCSC Genome Browser custom track) |
| Alignm length: | 977 |
| Alignm identity: | 643 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 234 |
| Conread position: | 179-1247 |
| Cow position: | chr19:23613593-23614678 (view UCSC Genome Browser custom track) |
| Alignm length: | 1089 |
| Alignm identity: | 698 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 303 |
| Conread position: | 180-1024 |
| Cow position: | chr19:20677945-20678802 (view UCSC Genome Browser custom track) |
| Alignm length: | 861 |
| Alignm identity: | 542 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 759 |
| Conread position: | 180-1089 |
| Cow position: | chr19:23614182-23615107 (view UCSC Genome Browser custom track) |
| Alignm length: | 929 |
| Alignm identity: | 607 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 639 |
| Conread position: | 184-1176 |
| Cow position: | chr19:23649385-23650392 (view UCSC Genome Browser custom track) |
| Alignm length: | 1009 |
| Alignm identity: | 641 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 724 |
| Conread position: | 187-948 |
| Cow position: | chr19:14959567-14958806 (view UCSC Genome Browser custom track) |
| Alignm length: | 777 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 261 |
| Conread position: | 187-1096 |
| Cow position: | chr19:23649556-23650480 (view UCSC Genome Browser custom track) |
| Alignm length: | 927 |
| Alignm identity: | 595 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 297 |
| Conread position: | 187-1134 |
| Cow position: | chr19:20677701-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 967 |
| Alignm identity: | 631 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 335 |
| Conread position: | 187-1155 |
| Cow position: | chr19:14960055-14959096 (view UCSC Genome Browser custom track) |
| Alignm length: | 992 |
| Alignm identity: | 629 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 239 |
| Conread position: | 187-1164 |
| Cow position: | chr19:14940074-14941066 (view UCSC Genome Browser custom track) |
| Alignm length: | 996 |
| Alignm identity: | 654 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 340 |
| Conread position: | 187-1177 |
| Cow position: | chr19:14939990-14940995 (view UCSC Genome Browser custom track) |
| Alignm length: | 1007 |
| Alignm identity: | 666 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 306 |
| Conread position: | 187-1177 |
| Cow position: | chr19:23649304-23650309 (view UCSC Genome Browser custom track) |
| Alignm length: | 1010 |
| Alignm identity: | 629 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 224 |
| Conread position: | 187-1188 |
| Cow position: | chr19:23613350-23614366 (view UCSC Genome Browser custom track) |
| Alignm length: | 1017 |
| Alignm identity: | 670 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 187-1189 |
| Cow position: | chr19:23613854-23614871 (view UCSC Genome Browser custom track) |
| Alignm length: | 1019 |
| Alignm identity: | 658 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 967 |
| Conread position: | 187-1219 |
| Cow position: | chr19:23613518-23614566 (view UCSC Genome Browser custom track) |
| Alignm length: | 1051 |
| Alignm identity: | 696 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 131 |
| Conread position: | 187-1235 |
| Cow position: | chr19:23613770-23614834 (view UCSC Genome Browser custom track) |
| Alignm length: | 1069 |
| Alignm identity: | 717 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 236 |
| Conread position: | 188-1177 |
| Cow position: | chr19:14959804-14958829 (view UCSC Genome Browser custom track) |
| Alignm length: | 1001 |
| Alignm identity: | 635 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 92 |
| Conread position: | 188-1213 |
| Cow position: | chr19:23614023-23615064 (view UCSC Genome Browser custom track) |
| Alignm length: | 1046 |
| Alignm identity: | 690 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 304 |
| Conread position: | 191-638 |
| Cow position: | chr19:14948459-14947999 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 49, 7 |
| Conread position: | 200-879 |
| Cow position: | chr19:43570367-43569687 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 126 |
| Conread position: | 201-838 |
| Cow position: | chr19:14940424-14941076 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 219 |
| Conread position: | 244-854 |
| Cow position: | chr19:23597091-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 581 |
| Conread position: | 279-693 |
| Cow position: | chr19:20635359-20634946 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 261 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 49, 108 |
| Conread position: | 279-717 |
| Cow position: | chr19:14948444-14948004 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 357 |
| Conread position: | 280-1155 |
| Cow position: | chr19:23649577-23650455 (view UCSC Genome Browser custom track) |
| Alignm length: | 881 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 192 |
| Conread position: | 281-850 |
| Cow position: | chr19:23649914-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 30 |
| Conread position: | 281-1022 |
| Cow position: | chr19:23596972-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 63 |
| Conread position: | 281-1245 |
| Cow position: | chr19:20677639-20678607 (view UCSC Genome Browser custom track) |
| Alignm length: | 975 |
| Alignm identity: | 631 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 21 |
| Conread position: | 281-1249 |
| Cow position: | chr19:14940012-14940984 (view UCSC Genome Browser custom track) |
| Alignm length: | 976 |
| Alignm identity: | 643 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 139 |
| Conread position: | 284-783 |
| Cow position: | chr19:20635522-20635020 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 275 |
| Conread position: | 284-967 |
| Cow position: | chr19:14960448-14959766 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 284-1103 |
| Cow position: | chr19:14959626-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 826 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 25 |
| Conread position: | 320-714 |
| Cow position: | chr19:14916029-14916418 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 244 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 271, 108 |
| Conread position: | 321-1173 |
| Cow position: | chr19:23596847-23597696 (view UCSC Genome Browser custom track) |
| Alignm length: | 855 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 186 |
| Conread position: | 323-1189 |
| Cow position: | chr19:14939973-14940839 (view UCSC Genome Browser custom track) |
| Alignm length: | 869 |
| Alignm identity: | 585 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 325-950 |
| Cow position: | chr19:20635646-20635021 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 147 |
| Conread position: | 326-1047 |
| Cow position: | chr19:43570394-43569687 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 478, 116 |
| Conread position: | 334-860 |
| Cow position: | chr19:14915958-14916470 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 333 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 38, 19 |
| Conread position: | 337-867 |
| Cow position: | chr19:20635550-20635020 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 149 |
| Conread position: | 338-1188 |
| Cow position: | chr19:23649302-23650152 (view UCSC Genome Browser custom track) |
| Alignm length: | 851 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 341-1248 |
| Cow position: | chr19:23613351-23614259 (view UCSC Genome Browser custom track) |
| Alignm length: | 910 |
| Alignm identity: | 604 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 315 |
| Conread position: | 344-1223 |
| Cow position: | chr19:20677453-20678333 (view UCSC Genome Browser custom track) |
| Alignm length: | 883 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 145 |
| Conread position: | 356-1188 |
| Cow position: | chr19:23649404-23650236 (view UCSC Genome Browser custom track) |
| Alignm length: | 834 |
| Alignm identity: | 540 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 432, 438 |
| Conread position: | 362-1099 |
| Cow position: | chr19:14960451-14959718 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 570, 294 |
| Conread position: | 414-754 |
| Cow position: | chr19:14948391-14948051 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 238, 248 |
| Conread position: | 417-1188 |
| Cow position: | chr19:23596859-23597627 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 66 |
| Conread position: | 417-1247 |
| Cow position: | chr19:23613343-23614174 (view UCSC Genome Browser custom track) |
| Alignm length: | 834 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 64 |
| Conread position: | 424-1251 |
| Cow position: | chr19:14959650-14958838 (view UCSC Genome Browser custom track) |
| Alignm length: | 832 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 429-1136 |
| Cow position: | chr19:20677289-20677993 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 71 |
| Conread position: | 465-1064 |
| Cow position: | chr19:14915839-14916432 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 386 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 20, 53 |
| Conread position: | 477-1166 |
| Cow position: | chr19:14960506-14959817 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 20 |
| Conread position: | 482-1188 |
| Cow position: | chr19:23596840-23597543 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 193 |
| Conread position: | 488-977 |
| Cow position: | chr19:14948484-14947996 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 500-1119 |
| Cow position: | chr19:20635639-20635020 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 75 |
| Conread position: | 500-1188 |
| Cow position: | chr19:43570388-43569712 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 524-1189 |
| Cow position: | chr19:43570447-43569793 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 564-1046 |
| Cow position: | chr19:14948492-14948011 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 304 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 133, 89 |
| Conread position: | 571-1137 |
| Cow position: | chr19:20635736-20635170 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 38 |
| Conread position: | 583-1195 |
| Cow position: | chr19:20635640-20635027 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 479, 469 |
| Conread position: | 629-1177 |
| Cow position: | chr19:14960436-14959890 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 0 |
| Conread position: | 656-1279 |
| Cow position: | chr19:23649284-23649907 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 534, 570 |
| Conread position: | 660-1142 |
| Cow position: | chr19:14948480-14947999 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 76 |
| Conread position: | 699-1138 |
| Cow position: | chr19:20677307-20677743 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 136, 52 |
| Conread position: | 701-1270 |
| Cow position: | chr19:14960448-14959880 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 104 |
| Conread position: | 722-1189 |
| Cow position: | chr19:23596828-23597292 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 23, 8 |
| Conread position: | 725-1273 |
| Cow position: | chr19:23613315-23613864 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 18 |
| Conread position: | 739-1250 |
| Cow position: | chr19:23649283-23649795 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 66 |
| Conread position: | 752-1180 |
| Cow position: | chr19:14915956-14916379 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 49, 24 |
| Conread position: | 772-1174 |
| Cow position: | chr19:14948452-14948051 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 341, 52 |
| Conread position: | 842-1188 |
| Cow position: | chr19:14960475-14960131 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 326, 0 |
| Conread position: | 905-1176 |
| Cow position: | chr19:23649281-23649552 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 950-1263 |
| Cow position: | chr19:14960451-14960137 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 212 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 241, 276 |
Show alignments to all cow chromosomes.