Cow genome map

Conread name: Ss1.1-rdbla0127_j23.5.5

Conread position: 176-1212
Cow position: chr22:12431836-12430783 (view UCSC Genome Browser custom track)
Alignm length: 1057
Alignm identity: 700
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 313

Conread position: 179-1136
Cow position: chr22:14429805-14430778 (view UCSC Genome Browser custom track)
Alignm length: 984
Alignm identity: 636
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 250

Conread position: 179-1190
Cow position: chr22:12399769-12398741 (view UCSC Genome Browser custom track)
Alignm length: 1033
Alignm identity: 699
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 143

Conread position: 180-1015
Cow position: chr22:12431412-12430561 (view UCSC Genome Browser custom track)
Alignm length: 854
Alignm identity: 548
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 480

Conread position: 180-1103
Cow position: chr22:12476229-12475290 (view UCSC Genome Browser custom track)
Alignm length: 943
Alignm identity: 629
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 309

Conread position: 180-1103
Cow position: chr22:12499030-12499969 (view UCSC Genome Browser custom track)
Alignm length: 943
Alignm identity: 616
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 309

Conread position: 180-1251
Cow position: chr22:12431748-12430660 (view UCSC Genome Browser custom track)
Alignm length: 1091
Alignm identity: 694
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 304

Conread position: 183-1251
Cow position: chr22:12399849-12398764 (view UCSC Genome Browser custom track)
Alignm length: 1088
Alignm identity: 742
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 472

Conread position: 187-768
Cow position: chr22:11640858-11641454 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 312

Conread position: 187-950
Cow position: chr22:14430150-14430928 (view UCSC Genome Browser custom track)
Alignm length: 784
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 245

Conread position: 187-1141
Cow position: chr22:12498954-12499923 (view UCSC Genome Browser custom track)
Alignm length: 971
Alignm identity: 631
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 465

Conread position: 187-1177
Cow position: chr22:12476305-12475300 (view UCSC Genome Browser custom track)
Alignm length: 1007
Alignm identity: 665
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 468

Conread position: 187-1177
Cow position: chr22:14429898-14430903 (view UCSC Genome Browser custom track)
Alignm length: 1013
Alignm identity: 623
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 245

Conread position: 188-1027
Cow position: chr22:12476136-12475282 (view UCSC Genome Browser custom track)
Alignm length: 858
Alignm identity: 566
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 467

Conread position: 188-1027
Cow position: chr22:12499123-12499977 (view UCSC Genome Browser custom track)
Alignm length: 857
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 131

Conread position: 188-1077
Cow position: chr22:12431487-12430583 (view UCSC Genome Browser custom track)
Alignm length: 907
Alignm identity: 589
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 716

Conread position: 188-1179
Cow position: chr22:12432411-12431405 (view UCSC Genome Browser custom track)
Alignm length: 1011
Alignm identity: 631
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 549

Conread position: 188-1273
Cow position: chr22:12432327-12431226 (view UCSC Genome Browser custom track)
Alignm length: 1109
Alignm identity: 707
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 133

Conread position: 189-1189
Cow position: chr22:12432073-12431059 (view UCSC Genome Browser custom track)
Alignm length: 1019
Alignm identity: 651
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 5

Conread position: 190-684
Cow position: chr22:11666450-11666959 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 321
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 60, 206

Conread position: 190-765
Cow position: chr22:11701104-11701694 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 206

Conread position: 203-1018
Cow position: chr22:12458592-12457762 (view UCSC Genome Browser custom track)
Alignm length: 832
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 530

Conread position: 248-1021
Cow position: chr22:46654077-46654863 (view UCSC Genome Browser custom track)
Alignm length: 791
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 148

Conread position: 248-1188
Cow position: chr22:12498934-12499886 (view UCSC Genome Browser custom track)
Alignm length: 954
Alignm identity: 638
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 930

Conread position: 277-1223
Cow position: chr22:12476287-12475336 (view UCSC Genome Browser custom track)
Alignm length: 952
Alignm identity: 639
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 278-1217
Cow position: chr22:12432480-12431534 (view UCSC Genome Browser custom track)
Alignm length: 949
Alignm identity: 614
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 127

Conread position: 279-1014
Cow position: chr22:12385648-12384908 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 205

Conread position: 279-1085
Cow position: chr22:12458588-12457779 (view UCSC Genome Browser custom track)
Alignm length: 815
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 381

Conread position: 279-1104
Cow position: chr22:11640626-11641454 (view UCSC Genome Browser custom track)
Alignm length: 832
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 61

Conread position: 280-763
Cow position: chr22:12418922-12418434 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 303
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 39, 273

Conread position: 280-1188
Cow position: chr22:12476368-12475457 (view UCSC Genome Browser custom track)
Alignm length: 912
Alignm identity: 603
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 281-775
Cow position: chr22:11666469-11666966 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 23

Conread position: 281-798
Cow position: chr22:11701123-11701643 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 331
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 12, 115

Conread position: 281-798
Cow position: chr22:12419005-12418485 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 281-999
Cow position: chr22:12544603-12545324 (view UCSC Genome Browser custom track)
Alignm length: 727
Alignm identity: 414
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 37, 127

Conread position: 281-1021
Cow position: chr22:11640712-11641455 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 361

Conread position: 281-1136
Cow position: chr22:14429668-14430526 (view UCSC Genome Browser custom track)
Alignm length: 864
Alignm identity: 541
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 28

Conread position: 281-1166
Cow position: chr22:12432390-12431502 (view UCSC Genome Browser custom track)
Alignm length: 894
Alignm identity: 573
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 188

Conread position: 281-1215
Cow position: chr22:12431886-12430948 (view UCSC Genome Browser custom track)
Alignm length: 942
Alignm identity: 622
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 361

Conread position: 283-915
Cow position: chr22:12544689-12545324 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 368
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 33, 114

Conread position: 284-1051
Cow position: chr22:14468000-14468760 (view UCSC Genome Browser custom track)
Alignm length: 780
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 116

Conread position: 284-1101
Cow position: chr22:46654038-46654859 (view UCSC Genome Browser custom track)
Alignm length: 828
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 19

Conread position: 284-1134
Cow position: chr22:14430175-14431021 (view UCSC Genome Browser custom track)
Alignm length: 865
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 122

Conread position: 290-1136
Cow position: chr22:14429596-14430442 (view UCSC Genome Browser custom track)
Alignm length: 853
Alignm identity: 537
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 33

Conread position: 295-1083
Cow position: chr22:12385716-12384923 (view UCSC Genome Browser custom track)
Alignm length: 797
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 273

Conread position: 325-1022
Cow position: chr22:14442029-14442723 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 404
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 394, 403

Conread position: 337-1164
Cow position: chr22:12419299-12418455 (view UCSC Genome Browser custom track)
Alignm length: 846
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 141

Conread position: 344-967
Cow position: chr22:14442216-14442827 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 372
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 65, 73

Conread position: 355-1134
Cow position: chr22:14441891-14442667 (view UCSC Genome Browser custom track)
Alignm length: 785
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 150

Conread position: 356-1136
Cow position: chr22:14441976-14442751 (view UCSC Genome Browser custom track)
Alignm length: 791
Alignm identity: 473
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 36, 61

Conread position: 356-1177
Cow position: chr22:12431388-12430567 (view UCSC Genome Browser custom track)
Alignm length: 827
Alignm identity: 553
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 117

Conread position: 356-1186
Cow position: chr22:12458592-12457762 (view UCSC Genome Browser custom track)
Alignm length: 834
Alignm identity: 550
Alignm E-value: 0
Alignm gaps (pig, cow): 529, 544

Conread position: 356-1219
Cow position: chr22:12476373-12475509 (view UCSC Genome Browser custom track)
Alignm length: 865
Alignm identity: 569
Alignm E-value: 0
Alignm gaps (pig, cow): 834, 0

Conread position: 356-1249
Cow position: chr22:12498886-12499780 (view UCSC Genome Browser custom track)
Alignm length: 896
Alignm identity: 584
Alignm E-value: 0
Alignm gaps (pig, cow): 834, 870

Conread position: 362-1136
Cow position: chr22:14429505-14430274 (view UCSC Genome Browser custom track)
Alignm length: 779
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 6

Conread position: 377-1188
Cow position: chr22:11640643-11641454 (view UCSC Genome Browser custom track)
Alignm length: 819
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 26

Conread position: 379-1177
Cow position: chr22:12385713-12384913 (view UCSC Genome Browser custom track)
Alignm length: 804
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 48

Conread position: 389-1248
Cow position: chr22:12498835-12499695 (view UCSC Genome Browser custom track)
Alignm length: 863
Alignm identity: 561
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 245

Conread position: 389-1253
Cow position: chr22:12476424-12475558 (view UCSC Genome Browser custom track)
Alignm length: 869
Alignm identity: 557
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 247

Conread position: 395-1136
Cow position: chr22:46653984-46654725 (view UCSC Genome Browser custom track)
Alignm length: 747
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 73

Conread position: 405-1189
Cow position: chr22:12458627-12457843 (view UCSC Genome Browser custom track)
Alignm length: 789
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 73

Conread position: 414-1114
Cow position: chr22:46654087-46654787 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 137

Conread position: 415-1135
Cow position: chr22:14467966-14468685 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 135

Conread position: 423-1175
Cow position: chr22:12432497-12431745 (view UCSC Genome Browser custom track)
Alignm length: 754
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 469, 477

Conread position: 426-1166
Cow position: chr22:12419294-12418537 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 52

Conread position: 428-684
Cow position: chr22:12545650-12545904 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 177
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 25, 56

Conread position: 433-1189
Cow position: chr22:11640615-11641371 (view UCSC Genome Browser custom track)
Alignm length: 764
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 56

Conread position: 438-883
Cow position: chr22:11666461-11666906 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 136

Conread position: 438-967
Cow position: chr22:11701115-11701644 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 290

Conread position: 451-1147
Cow position: chr22:46653956-46654652 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 101

Conread position: 477-1226
Cow position: chr22:11640575-11641326 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 112

Conread position: 481-1189
Cow position: chr22:12385695-12384985 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 16

Conread position: 483-1175
Cow position: chr22:12419321-12418612 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 672

Conread position: 488-1194
Cow position: chr22:12544645-12545354 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 416
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 301, 325

Conread position: 489-1219
Cow position: chr22:12458627-12457896 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 403, 395

Conread position: 506-1219
Cow position: chr22:12432498-12431784 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 229

Conread position: 511-967
Cow position: chr22:11666450-11666906 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 123

Conread position: 511-1102
Cow position: chr22:11701104-11701695 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 292

Conread position: 521-1137
Cow position: chr22:14429491-14430107 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 127

Conread position: 535-1188
Cow position: chr22:46653956-46654609 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 101

Conread position: 589-1137
Cow position: chr22:14467972-14468520 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 66

Conread position: 589-1169
Cow position: chr22:14441957-14442537 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 353
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 296, 304

Conread position: 600-1138
Cow position: chr22:14441884-14442422 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 315
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 303, 295

Conread position: 606-1249
Cow position: chr22:12544595-12545239 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 381
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 275, 286

Conread position: 608-1136
Cow position: chr22:11701117-11701645 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 29

Conread position: 620-1138
Cow position: chr22:14429510-14430024 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 660-1136
Cow position: chr22:14467959-14468435 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 304

Conread position: 673-1212
Cow position: chr22:12432499-12431959 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 425, 431

Conread position: 691-1177
Cow position: chr22:11701116-11701602 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 313
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 111, 123

Conread position: 699-1138
Cow position: chr22:14429504-14429940 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 109

Conread position: 730-1173
Cow position: chr22:12458638-12458195 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 254

Conread position: 744-1188
Cow position: chr22:12544565-12545009 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 260
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 229, 255

Conread position: 806-1249
Cow position: chr22:12458645-12458202 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 278
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 378, 12

Conread position: 844-1249
Cow position: chr22:12399923-12399522 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 266
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 17, 84

Conread position: 907-1138
Cow position: chr22:14467954-14468185 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 155
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 166, 157

Show alignments to all cow chromosomes.