Cow genome map
| Conread name: | Ss1.1-rdbla0127_j23.5.5 |
| Conread position: | 176-526 |
| Cow position: | chr23:24639708-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 12, 238 |
| Conread position: | 183-552 |
| Cow position: | chr23:24522572-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 183-711 |
| Cow position: | chr23:25626530-25627071 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 40 |
| Conread position: | 187-1142 |
| Cow position: | chr23:24522733-24521763 (view UCSC Genome Browser custom track) |
| Alignm length: | 992 |
| Alignm identity: | 636 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 128 |
| Conread position: | 187-1147 |
| Cow position: | chr23:25626114-25627087 (view UCSC Genome Browser custom track) |
| Alignm length: | 982 |
| Alignm identity: | 618 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 307 |
| Conread position: | 187-1166 |
| Cow position: | chr23:25626030-25627021 (view UCSC Genome Browser custom track) |
| Alignm length: | 1001 |
| Alignm identity: | 640 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 309 |
| Conread position: | 188-501 |
| Cow position: | chr23:25724042-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 188-601 |
| Cow position: | chr23:24560553-24560125 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 282 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 61, 300 |
| Conread position: | 248-784 |
| Cow position: | chr23:24626216-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 53 |
| Conread position: | 267-1018 |
| Cow position: | chr23:24560882-24560130 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 36 |
| Conread position: | 279-1002 |
| Cow position: | chr23:24547310-24546588 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 530 |
| Conread position: | 280-806 |
| Cow position: | chr23:25698635-25698106 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 334 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 29 |
| Conread position: | 280-1114 |
| Cow position: | chr23:24639237-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 842 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 152 |
| Conread position: | 281-585 |
| Cow position: | chr23:25724021-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 23, 191 |
| Conread position: | 281-701 |
| Cow position: | chr23:24639658-24640081 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 200 |
| Conread position: | 281-850 |
| Cow position: | chr23:24560700-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 281-851 |
| Cow position: | chr23:25660173-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 281-889 |
| Cow position: | chr23:24536023-24535411 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 195 |
| Conread position: | 320-916 |
| Cow position: | chr23:25698676-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 67 |
| Conread position: | 320-1175 |
| Cow position: | chr23:25626094-25626946 (view UCSC Genome Browser custom track) |
| Alignm length: | 857 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 159 |
| Conread position: | 320-1249 |
| Cow position: | chr23:25626010-25626937 (view UCSC Genome Browser custom track) |
| Alignm length: | 934 |
| Alignm identity: | 594 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 147 |
| Conread position: | 340-973 |
| Cow position: | chr23:24522815-24522187 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 24 |
| Conread position: | 341-993 |
| Cow position: | chr23:24547329-24546677 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 131 |
| Conread position: | 356-681 |
| Cow position: | chr23:24654049-24654374 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 356-929 |
| Cow position: | chr23:25660167-25660740 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 122 |
| Conread position: | 356-972 |
| Cow position: | chr23:24536029-24535412 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 133 |
| Conread position: | 356-1091 |
| Cow position: | chr23:24560874-24560139 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 133 |
| Conread position: | 356-1188 |
| Cow position: | chr23:24639232-24640064 (view UCSC Genome Browser custom track) |
| Alignm length: | 835 |
| Alignm identity: | 544 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 157 |
| Conread position: | 364-868 |
| Cow position: | chr23:24626251-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 11 |
| Conread position: | 421-1005 |
| Cow position: | chr23:25698659-25698075 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 57 |
| Conread position: | 423-1019 |
| Cow position: | chr23:25660150-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 56 |
| Conread position: | 424-1113 |
| Cow position: | chr23:24547330-24546641 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 60 |
| Conread position: | 424-1190 |
| Cow position: | chr23:24560890-24560124 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 60 |
| Conread position: | 430-671 |
| Cow position: | chr23:24521972-24521730 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 49 |
| Conread position: | 438-767 |
| Cow position: | chr23:24654047-24654376 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 32, 40 |
| Conread position: | 439-881 |
| Cow position: | chr23:24522118-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 33, 42 |
| Conread position: | 439-1251 |
| Cow position: | chr23:25625961-25626771 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 368, 375 |
| Conread position: | 440-1056 |
| Cow position: | chr23:24536029-24535412 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 444-1085 |
| Cow position: | chr23:25724107-25723469 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 14 |
| Conread position: | 487-1084 |
| Cow position: | chr23:25698677-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 65 |
| Conread position: | 503-921 |
| Cow position: | chr23:24626303-24626721 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 503-1092 |
| Cow position: | chr23:25660146-25660735 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 509-1165 |
| Cow position: | chr23:24522814-24522163 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 24 |
| Conread position: | 510-871 |
| Cow position: | chr23:24654034-24654396 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 11, 66 |
| Conread position: | 523-965 |
| Cow position: | chr23:24522118-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 276 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 63, 52 |
| Conread position: | 523-1173 |
| Cow position: | chr23:24547315-24546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 524-1159 |
| Cow position: | chr23:24536029-24535391 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 163 |
| Conread position: | 535-1173 |
| Cow position: | chr23:25625889-25626527 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 53 |
| Conread position: | 552-1036 |
| Cow position: | chr23:24626268-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 36 |
| Conread position: | 563-1146 |
| Cow position: | chr23:25698685-25698102 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 73 |
| Conread position: | 587-1177 |
| Cow position: | chr23:25660146-25660736 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 46 |
| Conread position: | 593-1219 |
| Cow position: | chr23:24522814-24522192 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 27 |
| Conread position: | 606-1219 |
| Cow position: | chr23:24639230-24639844 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 199 |
| Conread position: | 606-1224 |
| Cow position: | chr23:24536031-24535410 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 588, 0 |
| Conread position: | 608-955 |
| Cow position: | chr23:24654049-24654396 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 634-1270 |
| Cow position: | chr23:24547288-24546652 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 556, 620 |
| Conread position: | 636-1120 |
| Cow position: | chr23:24626268-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 29 |
| Conread position: | 653-1188 |
| Cow position: | chr23:24560913-24560378 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 660-1050 |
| Cow position: | chr23:25724143-25723753 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 156, 133 |
| Conread position: | 669-1023 |
| Cow position: | chr23:24654024-24654380 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 670-1237 |
| Cow position: | chr23:25660145-25660713 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 12 |
| Conread position: | 672-1188 |
| Cow position: | chr23:24547334-24546818 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 134 |
| Conread position: | 691-1131 |
| Cow position: | chr23:24522118-24521691 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 692-1188 |
| Cow position: | chr23:25698640-25698144 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 323 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 24, 31 |
| Conread position: | 726-1210 |
| Cow position: | chr23:24626274-24626756 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 451, 0 |
| Conread position: | 731-1189 |
| Cow position: | chr23:25698685-25698227 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 293 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 83, 73 |
| Conread position: | 772-1203 |
| Cow position: | chr23:24654045-24654471 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 282 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 353, 371 |
| Conread position: | 773-1176 |
| Cow position: | chr23:24639229-24639632 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 160 |
| Conread position: | 773-1188 |
| Cow position: | chr23:24536032-24535617 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 166 |
| Conread position: | 781-1189 |
| Cow position: | chr23:25724106-25723699 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 0 |
| Conread position: | 785-1188 |
| Cow position: | chr23:24536104-24535701 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 26 |
| Conread position: | 844-1249 |
| Cow position: | chr23:24547330-24546924 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 346, 0 |
| Conread position: | 853-1176 |
| Cow position: | chr23:24654042-24654365 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 864-1176 |
| Cow position: | chr23:25724107-25723795 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 913-1220 |
| Cow position: | chr23:24639201-24639510 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 180, 188 |
| Conread position: | 938-1188 |
| Cow position: | chr23:24654043-24654293 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 944-1177 |
| Cow position: | chr23:25724111-25723878 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.