Cow genome map
| Conread name: | Ss1.1-rdbla0127_j23.5.5 |
| Conread position: | 165-1174 |
| Cow position: | chr28:9298542-9299550 (view UCSC Genome Browser custom track) |
| Alignm length: | 1027 |
| Alignm identity: | 646 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 272 |
| Conread position: | 179-696 |
| Cow position: | chr28:7810422-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 132 |
| Conread position: | 179-1167 |
| Cow position: | chr28:9298724-9299708 (view UCSC Genome Browser custom track) |
| Alignm length: | 1007 |
| Alignm identity: | 621 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 274 |
| Conread position: | 179-1221 |
| Cow position: | chr28:7757826-7758869 (view UCSC Genome Browser custom track) |
| Alignm length: | 1065 |
| Alignm identity: | 662 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 45 |
| Conread position: | 180-908 |
| Cow position: | chr28:7758163-7758891 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 164 |
| Conread position: | 187-1091 |
| Cow position: | chr28:7757415-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 922 |
| Alignm identity: | 608 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 306 |
| Conread position: | 187-1221 |
| Cow position: | chr28:9252603-9253649 (view UCSC Genome Browser custom track) |
| Alignm length: | 1053 |
| Alignm identity: | 691 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 141 |
| Conread position: | 188-554 |
| Cow position: | chr28:33210228-33210610 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 53, 125 |
| Conread position: | 188-693 |
| Cow position: | chr28:34696080-34696598 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 320 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 50, 226 |
| Conread position: | 188-877 |
| Cow position: | chr28:9299067-9299750 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 189-805 |
| Cow position: | chr28:9290089-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 123 |
| Conread position: | 191-1271 |
| Cow position: | chr28:7757755-7758834 (view UCSC Genome Browser custom track) |
| Alignm length: | 1100 |
| Alignm identity: | 687 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 396 |
| Conread position: | 248-948 |
| Cow position: | chr28:7810252-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 285 |
| Conread position: | 272-1022 |
| Cow position: | chr28:9298996-9299728 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 32 |
| Conread position: | 279-1337 |
| Cow position: | chr28:7757351-7758412 (view UCSC Genome Browser custom track) |
| Alignm length: | 1065 |
| Alignm identity: | 673 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 201 |
| Conread position: | 284-1188 |
| Cow position: | chr28:11334113-11333206 (view UCSC Genome Browser custom track) |
| Alignm length: | 921 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 191 |
| Conread position: | 286-1143 |
| Cow position: | chr28:9289782-9290632 (view UCSC Genome Browser custom track) |
| Alignm length: | 870 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 99 |
| Conread position: | 318-807 |
| Cow position: | chr28:34679581-34679102 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 38 |
| Conread position: | 323-1059 |
| Cow position: | chr28:9289983-9290716 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 163 |
| Conread position: | 324-955 |
| Cow position: | chr28:11334154-11333523 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 162 |
| Conread position: | 341-768 |
| Cow position: | chr28:33210228-33210656 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 333, 0 |
| Conread position: | 341-978 |
| Cow position: | chr28:34695912-34696549 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 387 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 85, 58 |
| Conread position: | 348-892 |
| Cow position: | chr28:34673362-34673906 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 333 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 118, 130 |
| Conread position: | 349-1249 |
| Cow position: | chr28:7757178-7758073 (view UCSC Genome Browser custom track) |
| Alignm length: | 904 |
| Alignm identity: | 595 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 77 |
| Conread position: | 356-1176 |
| Cow position: | chr28:9298582-9299384 (view UCSC Genome Browser custom track) |
| Alignm length: | 822 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 83 |
| Conread position: | 364-1032 |
| Cow position: | chr28:7810287-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 114 |
| Conread position: | 367-1154 |
| Cow position: | chr28:9289782-9290559 (view UCSC Genome Browser custom track) |
| Alignm length: | 793 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 101 |
| Conread position: | 383-922 |
| Cow position: | chr28:34679600-34679071 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 54 |
| Conread position: | 386-1140 |
| Cow position: | chr28:9252895-9253651 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 108 |
| Conread position: | 400-1179 |
| Cow position: | chr28:11334246-11333467 (view UCSC Genome Browser custom track) |
| Alignm length: | 786 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 19 |
| Conread position: | 404-1249 |
| Cow position: | chr28:7756984-7757821 (view UCSC Genome Browser custom track) |
| Alignm length: | 848 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 31 |
| Conread position: | 405-1247 |
| Cow position: | chr28:9252584-9253422 (view UCSC Genome Browser custom track) |
| Alignm length: | 846 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 152 |
| Conread position: | 422-1003 |
| Cow position: | chr28:34673352-34673933 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 66 |
| Conread position: | 423-1141 |
| Cow position: | chr28:9289999-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 210 |
| Conread position: | 425-797 |
| Cow position: | chr28:33210228-33210602 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 198, 208 |
| Conread position: | 425-1176 |
| Cow position: | chr28:9298317-9299062 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 56 |
| Conread position: | 426-1165 |
| Cow position: | chr28:34695829-34696568 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 52 |
| Conread position: | 427-1176 |
| Cow position: | chr28:7757334-7758083 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 431-1249 |
| Cow position: | chr28:9252526-9253340 (view UCSC Genome Browser custom track) |
| Alignm length: | 822 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 53 |
| Conread position: | 437-1249 |
| Cow position: | chr28:9298579-9299374 (view UCSC Genome Browser custom track) |
| Alignm length: | 818 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 86 |
| Conread position: | 444-1115 |
| Cow position: | chr28:7810283-7810945 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 38 |
| Conread position: | 485-790 |
| Cow position: | chr28:7809808-7810107 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 230, 0 |
| Conread position: | 489-1177 |
| Cow position: | chr28:34695724-34696412 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 401 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 86, 61 |
| Conread position: | 492-1177 |
| Cow position: | chr28:34695811-34696496 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 404 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 178, 169 |
| Conread position: | 505-883 |
| Cow position: | chr28:33210223-33210603 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 248 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 578-1069 |
| Cow position: | chr28:34679573-34679092 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 325 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 154, 27 |
| Conread position: | 582-1222 |
| Cow position: | chr28:9298556-9299193 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 71 |
| Conread position: | 591-1142 |
| Cow position: | chr28:34673353-34673904 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 212 |
| Conread position: | 614-1247 |
| Cow position: | chr28:7810285-7810910 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 252 |
| Conread position: | 648-1176 |
| Cow position: | chr28:34695716-34696243 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 263, 9 |
| Conread position: | 655-1188 |
| Cow position: | chr28:11334243-11333710 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 325 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 219, 230 |
| Conread position: | 681-1249 |
| Cow position: | chr28:9252524-9253088 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 333 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 59, 49 |
| Conread position: | 756-1173 |
| Cow position: | chr28:33210222-33210641 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 6, 48 |
| Conread position: | 759-1143 |
| Cow position: | chr28:34673353-34673737 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 57, 52 |
| Conread position: | 823-1114 |
| Cow position: | chr28:7810251-7810533 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 830-1188 |
| Cow position: | chr28:34679573-34679214 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 247, 27 |
| Conread position: | 904-1186 |
| Cow position: | chr28:11334246-11333964 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 145, 152 |
| Conread position: | 928-1188 |
| Cow position: | chr28:33210227-33210487 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 199, 209 |
| Conread position: | 948-1202 |
| Cow position: | chr28:7810283-7810538 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 242, 0 |
Show alignments to all cow chromosomes.