Cow genome map
| Conread name: | Ss1.1-rdbla0127_j23.5.5 |
| Conread position: | 176-933 |
| Cow position: | chr7:42879037-42878264 (view UCSC Genome Browser custom track) |
| Alignm length: | 775 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 321 |
| Conread position: | 176-1269 |
| Cow position: | chr7:3179852-3180954 (view UCSC Genome Browser custom track) |
| Alignm length: | 1115 |
| Alignm identity: | 752 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 61 |
| Conread position: | 178-717 |
| Cow position: | chr7:8278173-8278719 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 343 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 131 |
| Conread position: | 179-557 |
| Cow position: | chr7:1439881-1440274 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 11, 90 |
| Conread position: | 179-883 |
| Cow position: | chr7:8278006-8278717 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 448 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 9, 226 |
| Conread position: | 179-1136 |
| Cow position: | chr7:8325143-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 984 |
| Alignm identity: | 620 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 241 |
| Conread position: | 179-1173 |
| Cow position: | chr7:1014431-1015435 (view UCSC Genome Browser custom track) |
| Alignm length: | 1013 |
| Alignm identity: | 643 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 136 |
| Conread position: | 179-1194 |
| Cow position: | chr7:8325059-8326090 (view UCSC Genome Browser custom track) |
| Alignm length: | 1039 |
| Alignm identity: | 654 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 226 |
| Conread position: | 187-929 |
| Cow position: | chr7:11601188-11600430 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 59 |
| Conread position: | 187-954 |
| Cow position: | chr7:11434971-11434209 (view UCSC Genome Browser custom track) |
| Alignm length: | 781 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 110 |
| Conread position: | 187-1136 |
| Cow position: | chr7:8242966-8243929 (view UCSC Genome Browser custom track) |
| Alignm length: | 971 |
| Alignm identity: | 594 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 233 |
| Conread position: | 187-1137 |
| Cow position: | chr7:8243385-8244330 (view UCSC Genome Browser custom track) |
| Alignm length: | 968 |
| Alignm identity: | 592 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 233 |
| Conread position: | 188-1147 |
| Cow position: | chr7:1014525-1015495 (view UCSC Genome Browser custom track) |
| Alignm length: | 972 |
| Alignm identity: | 623 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 929 |
| Conread position: | 188-1175 |
| Cow position: | chr7:42879276-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 1006 |
| Alignm identity: | 705 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 40 |
| Conread position: | 189-1137 |
| Cow position: | chr7:8277597-8278558 (view UCSC Genome Browser custom track) |
| Alignm length: | 975 |
| Alignm identity: | 610 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 39 |
| Conread position: | 194-1137 |
| Cow position: | chr7:8242805-8243762 (view UCSC Genome Browser custom track) |
| Alignm length: | 968 |
| Alignm identity: | 589 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 325 |
| Conread position: | 201-1251 |
| Cow position: | chr7:1014370-1015430 (view UCSC Genome Browser custom track) |
| Alignm length: | 1069 |
| Alignm identity: | 670 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 277 |
| Conread position: | 277-1249 |
| Cow position: | chr7:42879427-42878451 (view UCSC Genome Browser custom track) |
| Alignm length: | 980 |
| Alignm identity: | 643 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 191 |
| Conread position: | 280-877 |
| Cow position: | chr7:1438103-1438702 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 20 |
| Conread position: | 281-975 |
| Cow position: | chr7:18390099-18390796 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 194 |
| Conread position: | 282-650 |
| Cow position: | chr7:1438355-1438726 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 45, 198 |
| Conread position: | 283-1198 |
| Cow position: | chr7:1014296-1015209 (view UCSC Genome Browser custom track) |
| Alignm length: | 922 |
| Alignm identity: | 602 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 197 |
| Conread position: | 283-1249 |
| Cow position: | chr7:42879253-42878283 (view UCSC Genome Browser custom track) |
| Alignm length: | 972 |
| Alignm identity: | 675 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 523 |
| Conread position: | 287-1271 |
| Cow position: | chr7:3179725-3180711 (view UCSC Genome Browser custom track) |
| Alignm length: | 989 |
| Alignm identity: | 662 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 320-1096 |
| Cow position: | chr7:11601208-11600431 (view UCSC Genome Browser custom track) |
| Alignm length: | 782 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 313 |
| Conread position: | 323-1147 |
| Cow position: | chr7:1439452-1440276 (view UCSC Genome Browser custom track) |
| Alignm length: | 831 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 136 |
| Conread position: | 326-1092 |
| Cow position: | chr7:8325390-8326159 (view UCSC Genome Browser custom track) |
| Alignm length: | 775 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 76 |
| Conread position: | 335-1137 |
| Cow position: | chr7:8277590-8278392 (view UCSC Genome Browser custom track) |
| Alignm length: | 810 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 54 |
| Conread position: | 337-1219 |
| Cow position: | chr7:8277256-8278139 (view UCSC Genome Browser custom track) |
| Alignm length: | 894 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 44 |
| Conread position: | 338-1135 |
| Cow position: | chr7:8243216-8244010 (view UCSC Genome Browser custom track) |
| Alignm length: | 803 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 67 |
| Conread position: | 338-1140 |
| Cow position: | chr7:8277677-8278477 (view UCSC Genome Browser custom track) |
| Alignm length: | 810 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 156 |
| Conread position: | 340-1217 |
| Cow position: | chr7:42879277-42878399 (view UCSC Genome Browser custom track) |
| Alignm length: | 880 |
| Alignm identity: | 610 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 554, 547 |
| Conread position: | 341-1137 |
| Cow position: | chr7:8324817-8325613 (view UCSC Genome Browser custom track) |
| Alignm length: | 805 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 48 |
| Conread position: | 341-1247 |
| Cow position: | chr7:1014273-1015174 (view UCSC Genome Browser custom track) |
| Alignm length: | 911 |
| Alignm identity: | 583 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 137 |
| Conread position: | 356-1137 |
| Cow position: | chr7:8324748-8325529 (view UCSC Genome Browser custom track) |
| Alignm length: | 788 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 445, 460 |
| Conread position: | 356-1273 |
| Cow position: | chr7:3179712-3180630 (view UCSC Genome Browser custom track) |
| Alignm length: | 922 |
| Alignm identity: | 612 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 440, 460 |
| Conread position: | 364-730 |
| Cow position: | chr7:1438356-1438722 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 98, 114 |
| Conread position: | 364-1151 |
| Cow position: | chr7:18390017-18390804 (view UCSC Genome Browser custom track) |
| Alignm length: | 793 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 32 |
| Conread position: | 377-1177 |
| Cow position: | chr7:1014141-1014935 (view UCSC Genome Browser custom track) |
| Alignm length: | 803 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 45 |
| Conread position: | 396-1175 |
| Cow position: | chr7:11601216-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 782 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 82 |
| Conread position: | 403-1150 |
| Cow position: | chr7:1437982-1438722 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 19 |
| Conread position: | 405-1140 |
| Cow position: | chr7:11434990-11434276 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 145 |
| Conread position: | 414-1176 |
| Cow position: | chr7:1439459-1440221 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 129 |
| Conread position: | 420-1135 |
| Cow position: | chr7:8324728-8325443 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 217 |
| Conread position: | 420-1136 |
| Cow position: | chr7:8277255-8277971 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 308 |
| Conread position: | 421-1269 |
| Cow position: | chr7:1014103-1014944 (view UCSC Genome Browser custom track) |
| Alignm length: | 855 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 21 |
| Conread position: | 423-1025 |
| Cow position: | chr7:11434818-11434223 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 50 |
| Conread position: | 425-1083 |
| Cow position: | chr7:18390162-18390820 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 426-1189 |
| Cow position: | chr7:18389995-18390759 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 47 |
| Conread position: | 428-1249 |
| Cow position: | chr7:42879442-42878619 (view UCSC Genome Browser custom track) |
| Alignm length: | 825 |
| Alignm identity: | 551 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 95 |
| Conread position: | 430-1137 |
| Cow position: | chr7:8242804-8243510 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 206 |
| Conread position: | 487-1213 |
| Cow position: | chr7:1439448-1440175 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 144 |
| Conread position: | 567-1089 |
| Cow position: | chr7:1014079-1014601 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 324 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 175, 167 |
| Conread position: | 583-1188 |
| Cow position: | chr7:11601197-11600592 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 74 |
| Conread position: | 589-1136 |
| Cow position: | chr7:8324729-8325276 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 51 |
| Conread position: | 606-1189 |
| Cow position: | chr7:3179710-3180293 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 646-1249 |
| Cow position: | chr7:1439436-1440043 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 159 |
| Conread position: | 661-1212 |
| Cow position: | chr7:1437986-1438533 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 328 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 85, 54 |
| Conread position: | 666-1188 |
| Cow position: | chr7:1014096-1014616 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 28 |
| Conread position: | 757-1137 |
| Cow position: | chr7:8324729-8325109 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 232, 211 |
| Conread position: | 759-1176 |
| Cow position: | chr7:11601272-11600856 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 269 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 142, 45 |
| Conread position: | 931-1271 |
| Cow position: | chr7:3179699-3180039 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 248, 323 |
Show alignments to all cow chromosomes.