Cow genome map
| Conread name: | Ss1.1-rdbla0127_j23.5.5 |
| Conread position: | 179-590 |
| Cow position: | chr8:46816959-46817386 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 275 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 9, 302 |
| Conread position: | 179-670 |
| Cow position: | chr8:55581232-55581739 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 9, 219 |
| Conread position: | 179-1188 |
| Cow position: | chr8:46816119-46817144 (view UCSC Genome Browser custom track) |
| Alignm length: | 1027 |
| Alignm identity: | 704 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 659 |
| Conread position: | 179-1313 |
| Cow position: | chr8:46816203-46817357 (view UCSC Genome Browser custom track) |
| Alignm length: | 1161 |
| Alignm identity: | 771 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 45 |
| Conread position: | 187-726 |
| Cow position: | chr8:55581157-55581711 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 309 |
| Conread position: | 187-1188 |
| Cow position: | chr8:48407547-48406531 (view UCSC Genome Browser custom track) |
| Alignm length: | 1023 |
| Alignm identity: | 643 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 466 |
| Conread position: | 187-1189 |
| Cow position: | chr8:48407379-48406362 (view UCSC Genome Browser custom track) |
| Alignm length: | 1021 |
| Alignm identity: | 660 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 653 |
| Conread position: | 188-956 |
| Cow position: | chr8:48407042-48406259 (view UCSC Genome Browser custom track) |
| Alignm length: | 787 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 124 |
| Conread position: | 188-967 |
| Cow position: | chr8:55580906-55581700 (view UCSC Genome Browser custom track) |
| Alignm length: | 797 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 296 |
| Conread position: | 188-1174 |
| Cow position: | chr8:48407294-48406293 (view UCSC Genome Browser custom track) |
| Alignm length: | 1006 |
| Alignm identity: | 626 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 463 |
| Conread position: | 188-1177 |
| Cow position: | chr8:46816381-46817385 (view UCSC Genome Browser custom track) |
| Alignm length: | 1007 |
| Alignm identity: | 668 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 632 |
| Conread position: | 189-1269 |
| Cow position: | chr8:46816046-46817142 (view UCSC Genome Browser custom track) |
| Alignm length: | 1100 |
| Alignm identity: | 713 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 915 |
| Conread position: | 190-1253 |
| Cow position: | chr8:45200936-45202015 (view UCSC Genome Browser custom track) |
| Alignm length: | 1083 |
| Alignm identity: | 718 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 39 |
| Conread position: | 196-1248 |
| Cow position: | chr8:46815882-46816953 (view UCSC Genome Browser custom track) |
| Alignm length: | 1072 |
| Alignm identity: | 721 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 200-1051 |
| Cow position: | chr8:55580834-55581700 (view UCSC Genome Browser custom track) |
| Alignm length: | 868 |
| Alignm identity: | 546 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 630 |
| Conread position: | 215-1249 |
| Cow position: | chr8:45200719-45201759 (view UCSC Genome Browser custom track) |
| Alignm length: | 1046 |
| Alignm identity: | 686 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 7 |
| Conread position: | 279-1251 |
| Cow position: | chr8:46815893-46816872 (view UCSC Genome Browser custom track) |
| Alignm length: | 981 |
| Alignm identity: | 661 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 207 |
| Conread position: | 280-1251 |
| Cow position: | chr8:45200954-45201929 (view UCSC Genome Browser custom track) |
| Alignm length: | 978 |
| Alignm identity: | 661 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 203 |
| Conread position: | 281-1219 |
| Cow position: | chr8:48407609-48406667 (view UCSC Genome Browser custom track) |
| Alignm length: | 946 |
| Alignm identity: | 619 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 194 |
| Conread position: | 325-1136 |
| Cow position: | chr8:55580890-55581701 (view UCSC Genome Browser custom track) |
| Alignm length: | 813 |
| Alignm identity: | 535 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 716, 731 |
| Conread position: | 335-1188 |
| Cow position: | chr8:55580732-55581585 (view UCSC Genome Browser custom track) |
| Alignm length: | 856 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 219 |
| Conread position: | 356-1176 |
| Cow position: | chr8:48407615-48406795 (view UCSC Genome Browser custom track) |
| Alignm length: | 824 |
| Alignm identity: | 551 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 276 |
| Conread position: | 364-787 |
| Cow position: | chr8:6958057-6957635 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 264, 281 |
| Conread position: | 364-1177 |
| Cow position: | chr8:55580845-55581658 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 624, 629 |
| Conread position: | 411-1251 |
| Cow position: | chr8:46815536-46816368 (view UCSC Genome Browser custom track) |
| Alignm length: | 849 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 342, 48 |
| Conread position: | 424-1176 |
| Cow position: | chr8:48407631-48406879 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 450, 463 |
| Conread position: | 446-877 |
| Cow position: | chr8:6958059-6957629 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 28, 37 |
| Conread position: | 481-1189 |
| Cow position: | chr8:48407658-48406950 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 323 |
| Conread position: | 614-1039 |
| Cow position: | chr8:6958059-6957635 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 270, 284 |
| Conread position: | 782-1177 |
| Cow position: | chr8:6958059-6957665 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 266, 284 |
| Conread position: | 866-1166 |
| Cow position: | chr8:6958059-6957760 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 266, 290 |
Show alignments to all cow chromosomes.