Cow genome map
| Conread name: | Ss1.1-rdbla0127_j23.5.5 |
| Conread position: | 179-556 |
| Cow position: | chrX:25324589-25324200 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 253 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 9, 315 |
| Conread position: | 179-1115 |
| Cow position: | chrX:29045585-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 945 |
| Alignm identity: | 619 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 133 |
| Conread position: | 179-1187 |
| Cow position: | chrX:25325261-25324237 (view UCSC Genome Browser custom track) |
| Alignm length: | 1026 |
| Alignm identity: | 682 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 816 |
| Conread position: | 179-1271 |
| Cow position: | chrX:25325765-25324657 (view UCSC Genome Browser custom track) |
| Alignm length: | 1113 |
| Alignm identity: | 722 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 314 |
| Conread position: | 179-1279 |
| Cow position: | chrX:25325513-25324397 (view UCSC Genome Browser custom track) |
| Alignm length: | 1119 |
| Alignm identity: | 747 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 818 |
| Conread position: | 188-1251 |
| Cow position: | chrX:29045743-29044685 (view UCSC Genome Browser custom track) |
| Alignm length: | 1081 |
| Alignm identity: | 709 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 334 |
| Conread position: | 195-1249 |
| Cow position: | chrX:25325832-25324762 (view UCSC Genome Browser custom track) |
| Alignm length: | 1072 |
| Alignm identity: | 694 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 35 |
| Conread position: | 279-798 |
| Cow position: | chrX:13826761-13826239 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 316 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 40, 190 |
| Conread position: | 279-883 |
| Cow position: | chrX:13826845-13826238 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 359 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 31, 203 |
| Conread position: | 280-1116 |
| Cow position: | chrX:25309742-25310581 (view UCSC Genome Browser custom track) |
| Alignm length: | 842 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 20 |
| Conread position: | 282-1251 |
| Cow position: | chrX:25325565-25324592 (view UCSC Genome Browser custom track) |
| Alignm length: | 976 |
| Alignm identity: | 647 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 271 |
| Conread position: | 320-705 |
| Cow position: | chrX:14181327-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 159, 149 |
| Conread position: | 326-1249 |
| Cow position: | chrX:29045758-29044855 (view UCSC Genome Browser custom track) |
| Alignm length: | 927 |
| Alignm identity: | 602 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 305 |
| Conread position: | 334-989 |
| Cow position: | chrX:13826871-13826217 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 392 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 39, 51 |
| Conread position: | 334-1050 |
| Cow position: | chrX:12627348-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 65 |
| Conread position: | 338-1176 |
| Cow position: | chrX:25309719-25310557 (view UCSC Genome Browser custom track) |
| Alignm length: | 842 |
| Alignm identity: | 573 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 139 |
| Conread position: | 343-1177 |
| Cow position: | chrX:25325837-25325003 (view UCSC Genome Browser custom track) |
| Alignm length: | 838 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 40 |
| Conread position: | 398-1271 |
| Cow position: | chrX:25325866-25324993 (view UCSC Genome Browser custom track) |
| Alignm length: | 882 |
| Alignm identity: | 587 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 23 |
| Conread position: | 415-1134 |
| Cow position: | chrX:12627345-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 425 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 233, 135 |
| Conread position: | 422-1249 |
| Cow position: | chrX:25309721-25310547 (view UCSC Genome Browser custom track) |
| Alignm length: | 832 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 11 |
| Conread position: | 423-1189 |
| Cow position: | chrX:29045829-29045084 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 378 |
| Conread position: | 428-1125 |
| Cow position: | chrX:14181639-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 416 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 144, 138 |
| Conread position: | 455-1249 |
| Cow position: | chrX:25309668-25310463 (view UCSC Genome Browser custom track) |
| Alignm length: | 800 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 30 |
| Conread position: | 480-1135 |
| Cow position: | chrX:12627326-12627979 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 78 |
| Conread position: | 483-1197 |
| Cow position: | chrX:29045367-29044655 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 33 |
| Conread position: | 484-1195 |
| Cow position: | chrX:29045852-29045161 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 416, 396 |
| Conread position: | 509-1189 |
| Cow position: | chrX:13826948-13826268 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 300 |
| Conread position: | 539-1248 |
| Cow position: | chrX:25309668-25310378 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 36 |
| Conread position: | 569-1137 |
| Cow position: | chrX:12627331-12627897 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 73 |
| Conread position: | 730-1157 |
| Cow position: | chrX:29045858-29045434 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 104 |
| Conread position: | 732-1269 |
| Cow position: | chrX:25325868-25325330 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 30 |
| Conread position: | 815-1134 |
| Cow position: | chrX:12627325-12627643 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 73, 69 |
| Conread position: | 835-1251 |
| Cow position: | chrX:29045837-29045420 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 270 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 63, 50 |
Show alignments to all cow chromosomes.