Cow genome map
| Conread name: | Ss1.1-rdbla0134_b19.5 |
| Conread position: | 1-280 |
| Cow position: | chr17:22498817-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-301 |
| Cow position: | chr17:22473660-22473961 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 261, 0 |
| Conread position: | 1-386 |
| Cow position: | chr17:22473576-22473962 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 348, 0 |
| Conread position: | 1-459 |
| Cow position: | chr17:22551938-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 292 |
| Conread position: | 1-471 |
| Cow position: | chr17:22452307-22451837 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 42 |
| Conread position: | 1-511 |
| Cow position: | chr17:22499069-22498559 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 327 |
| Conread position: | 1-511 |
| Cow position: | chr17:22590028-22589518 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-516 |
| Cow position: | chr17:22552190-22551675 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 302 |
| Conread position: | 1-520 |
| Cow position: | chr17:22499237-22498718 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 317 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-520 |
| Cow position: | chr17:22552526-22552005 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 54 |
| Conread position: | 1-520 |
| Cow position: | chr17:22552694-22552173 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 315 |
| Conread position: | 1-522 |
| Cow position: | chr17:22590196-22589674 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 168 |
| Conread position: | 1-523 |
| Cow position: | chr17:22589776-22589252 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 396, 390 |
| Conread position: | 1-636 |
| Cow position: | chr17:22589692-22589054 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 568 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 548, 537 |
| Conread position: | 3-383 |
| Cow position: | chr17:22452053-22451673 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 290, 307 |
| Conread position: | 3-460 |
| Cow position: | chr17:22473494-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 430, 0 |
| Conread position: | 3-509 |
| Cow position: | chr17:22452221-22451715 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 300 |
| Conread position: | 3-509 |
| Cow position: | chr17:22452389-22451883 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 313 |
| Conread position: | 3-509 |
| Cow position: | chr17:22499319-22498813 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-509 |
| Cow position: | chr17:22552944-22552438 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-511 |
| Cow position: | chr17:22473326-22473834 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 65 |
| Conread position: | 3-511 |
| Cow position: | chr17:22473410-22473918 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-520 |
| Cow position: | chr17:22552272-22551753 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 140 |
| Conread position: | 3-595 |
| Cow position: | chr17:22589858-22589261 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 165 |
| Conread position: | 4-294 |
| Cow position: | chr17:22551767-22551477 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 205 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 135, 139 |
| Conread position: | 4-440 |
| Cow position: | chr17:22498982-22498546 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 271 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-509 |
| Cow position: | chr17:22499150-22498645 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-509 |
| Cow position: | chr17:22590109-22589604 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-510 |
| Cow position: | chr17:22589941-22589435 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 313 |
| Conread position: | 4-520 |
| Cow position: | chr17:22552103-22551585 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 299 |
| Conread position: | 4-520 |
| Cow position: | chr17:22552607-22552089 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 135 |
| Conread position: | 4-520 |
| Cow position: | chr17:22552775-22552257 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 299 |
| Conread position: | 4-520 |
| Cow position: | chr17:22552859-22552341 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 299 |
| Conread position: | 4-522 |
| Cow position: | chr17:22552019-22551499 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 313 |
| Conread position: | 4-523 |
| Cow position: | chr17:22552439-22551918 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 313 |
| Conread position: | 4-595 |
| Cow position: | chr17:22552355-22551759 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 73 |
| Conread position: | 8-520 |
| Cow position: | chr17:22553107-22552595 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 303 |
| Conread position: | 11-509 |
| Cow position: | chr17:22553018-22552522 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 8 |
| Conread position: | 19-449 |
| Cow position: | chr17:22498883-22498462 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 274 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 347, 0 |
| Conread position: | 19-464 |
| Cow position: | chr17:22499387-22498942 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 283 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 309, 299 |
| Conread position: | 26-483 |
| Cow position: | chr17:22553173-22552716 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 285 |
| Conread position: | 27-520 |
| Cow position: | chr17:22590254-22589759 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 463, 0 |
| Conread position: | 64-509 |
| Cow position: | chr17:22452412-22451967 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 146 |
| Conread position: | 76-509 |
| Cow position: | chr17:22590289-22589856 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 90-470 |
| Cow position: | chr17:22499400-22499020 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 244 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-471 |
| Cow position: | chr17:22473276-22473626 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 277, 267 |
| Conread position: | 143-545 |
| Cow position: | chr17:22590306-22589898 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 267 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 358, 0 |
| Conread position: | 181-524 |
| Cow position: | chr17:22499393-22499049 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 332, 0 |
| Conread position: | 278-595 |
| Cow position: | chr17:22553173-22552851 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 29, 23 |
Show alignments to all cow chromosomes.