Cow genome map
| Conread name: | Ss1.1-rdbla0134_b19.5 |
| Conread position: | 1-271 |
| Cow position: | chr19:14959089-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-281 |
| Cow position: | chr19:43569981-43569703 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 145, 136 |
| Conread position: | 1-297 |
| Cow position: | chr19:23650133-23650429 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 50, 65 |
| Conread position: | 1-372 |
| Cow position: | chr19:23614767-23615136 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 342, 0 |
| Conread position: | 1-394 |
| Cow position: | chr19:14948392-14947999 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 313, 303 |
| Conread position: | 1-426 |
| Cow position: | chr19:14940651-14941076 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 75 |
| Conread position: | 1-432 |
| Cow position: | chr19:14959251-14958826 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 132 |
| Conread position: | 1-449 |
| Cow position: | chr19:23649881-23650329 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 283 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 55, 79 |
| Conread position: | 1-463 |
| Cow position: | chr19:23613927-23614389 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 60 |
| Conread position: | 1-465 |
| Cow position: | chr19:23614431-23614895 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 316 |
| Conread position: | 1-470 |
| Cow position: | chr19:23614263-23614732 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-470 |
| Cow position: | chr19:43570233-43569764 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 137 |
| Conread position: | 1-471 |
| Cow position: | chr19:14960316-14959848 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 142 |
| Conread position: | 1-471 |
| Cow position: | chr19:20677858-20678328 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 149 |
| Conread position: | 1-471 |
| Cow position: | chr19:23613591-23614061 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 71 |
| Conread position: | 1-471 |
| Cow position: | chr19:23649461-23649931 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 143 |
| Conread position: | 1-471 |
| Cow position: | chr19:23649545-23650015 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 292 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-472 |
| Cow position: | chr19:20677606-20678077 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 302 |
| Conread position: | 1-476 |
| Cow position: | chr19:20677690-20678165 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 318 |
| Conread position: | 1-478 |
| Cow position: | chr19:14940567-14941044 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 75 |
| Conread position: | 1-499 |
| Cow position: | chr19:23614095-23614593 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-509 |
| Cow position: | chr19:14940147-14940655 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 142 |
| Conread position: | 1-509 |
| Cow position: | chr19:14940315-14940823 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 141 |
| Conread position: | 1-509 |
| Cow position: | chr19:14960400-14959894 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 247 |
| Conread position: | 1-509 |
| Cow position: | chr19:23614179-23614687 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-509 |
| Cow position: | chr19:23649797-23650305 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 302 |
| Conread position: | 1-511 |
| Cow position: | chr19:14940483-14940993 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 315 |
| Conread position: | 1-511 |
| Cow position: | chr19:14959410-14958915 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 322 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 76, 59 |
| Conread position: | 1-511 |
| Cow position: | chr19:14960066-14959572 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 314 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 368, 269 |
| Conread position: | 1-511 |
| Cow position: | chr19:23597188-23597698 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 67 |
| Conread position: | 1-511 |
| Cow position: | chr19:23613507-23614017 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 40 |
| Conread position: | 1-520 |
| Cow position: | chr19:20677774-20678292 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 510, 0 |
| Conread position: | 1-520 |
| Cow position: | chr19:23614347-23614866 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-363 |
| Cow position: | chr19:23597357-23597718 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-465 |
| Cow position: | chr19:23649714-23650177 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 303 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 75, 69 |
| Conread position: | 2-511 |
| Cow position: | chr19:14940064-14940573 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 141 |
| Conread position: | 3-301 |
| Cow position: | chr19:20635304-20635006 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-355 |
| Cow position: | chr19:14959165-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 3-440 |
| Cow position: | chr19:20678364-20678798 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 273 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 74, 54 |
| Conread position: | 3-447 |
| Cow position: | chr19:23597274-23597718 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 140 |
| Conread position: | 3-449 |
| Cow position: | chr19:20635472-20635026 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 294 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 3-449 |
| Cow position: | chr19:43570147-43569703 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 288 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 79, 101 |
| Conread position: | 3-465 |
| Cow position: | chr19:14948473-14948012 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 291 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 326, 71 |
| Conread position: | 3-465 |
| Cow position: | chr19:14959576-14959123 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 133, 141 |
| Conread position: | 3-470 |
| Cow position: | chr19:20635640-20635173 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 395, 388 |
| Conread position: | 3-471 |
| Cow position: | chr19:23613425-23613893 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-471 |
| Cow position: | chr19:23649967-23650435 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 147 |
| Conread position: | 3-499 |
| Cow position: | chr19:23613761-23614257 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 84 |
| Conread position: | 3-509 |
| Cow position: | chr19:23597025-23597528 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 15 |
| Conread position: | 3-519 |
| Cow position: | chr19:20678196-20678714 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 510, 0 |
| Conread position: | 3-520 |
| Cow position: | chr19:20677440-20677959 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 308 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 487, 0 |
| Conread position: | 3-520 |
| Cow position: | chr19:20677524-20678043 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 322 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 28, 32 |
| Conread position: | 3-520 |
| Cow position: | chr19:23614013-23614530 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 296 |
| Conread position: | 4-386 |
| Cow position: | chr19:20635387-20635005 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 316, 299 |
| Conread position: | 4-447 |
| Cow position: | chr19:23650052-23650494 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 135, 139 |
| Conread position: | 4-470 |
| Cow position: | chr19:20678029-20678495 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 299 |
| Conread position: | 4-471 |
| Cow position: | chr19:20635555-20635088 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 299 |
| Conread position: | 4-471 |
| Cow position: | chr19:23613846-23614313 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-471 |
| Cow position: | chr19:23649632-23650099 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 166 |
| Conread position: | 4-511 |
| Cow position: | chr19:20677945-20678452 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 329 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 73, 57 |
| Conread position: | 4-511 |
| Cow position: | chr19:23596942-23597446 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 493, 91 |
| Conread position: | 4-520 |
| Cow position: | chr19:23614518-23615034 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 322 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 310, 299 |
| Conread position: | 4-521 |
| Cow position: | chr19:23614602-23615119 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 136 |
| Conread position: | 5-523 |
| Cow position: | chr19:23649297-23649817 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 84 |
| Conread position: | 6-510 |
| Cow position: | chr19:14959657-14959162 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 314 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 9, 23 |
| Conread position: | 10-520 |
| Cow position: | chr19:14939988-14940498 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 428, 437 |
| Conread position: | 11-511 |
| Cow position: | chr19:20678120-20678620 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 444, 440 |
| Conread position: | 16-509 |
| Cow position: | chr19:23613354-23613847 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 128 |
| Conread position: | 57-511 |
| Cow position: | chr19:14960428-14959976 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 0 |
| Conread position: | 67-510 |
| Cow position: | chr19:23649443-23649886 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 77 |
| Conread position: | 76-556 |
| Cow position: | chr19:43570242-43569756 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 308 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 238, 227 |
| Conread position: | 82-471 |
| Cow position: | chr19:20635645-20635256 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 212 |
| Conread position: | 90-511 |
| Cow position: | chr19:14960479-14960060 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 49, 53 |
| Conread position: | 94-509 |
| Cow position: | chr19:14948465-14948052 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 13 |
| Conread position: | 96-512 |
| Cow position: | chr19:23613350-23613766 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 268 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 214, 198 |
| Conread position: | 121-483 |
| Cow position: | chr19:20677309-20677668 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 246, 52 |
| Conread position: | 123-470 |
| Cow position: | chr19:20635688-20635341 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 198, 180 |
| Conread position: | 155-471 |
| Cow position: | chr19:14959677-14959360 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 8, 43 |
| Conread position: | 158-471 |
| Cow position: | chr19:23649282-23649595 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 151, 145 |
| Conread position: | 182-484 |
| Cow position: | chr19:14915965-14916267 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 44, 172 |
| Conread position: | 229-471 |
| Cow position: | chr19:23613315-23613557 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 34, 23 |
| Conread position: | 244-478 |
| Cow position: | chr19:14948484-14948251 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 334-520 |
| Cow position: | chr19:23613335-23613522 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
Show alignments to all cow chromosomes.