Cow genome map


           Conread name:
           Ss1.1-rdbla0134_b19.5
        

               Conread position:
               1-271
               

               Cow position:
               
               

               Alignm length:
               271
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-281
               

               Cow position:
               
               

               Alignm length:
               282
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               145, 136
               

               Conread position:
               1-297
               

               Cow position:
               
               

               Alignm length:
               298
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               50, 65
               

               Conread position:
               1-372
               

               Cow position:
               
               

               Alignm length:
               372
               

               Alignm identity:
               228
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               342, 0
               

               Conread position:
               1-394
               

               Cow position:
               
               

               Alignm length:
               395
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               313, 303
               

               Conread position:
               1-426
               

               Cow position:
               
               

               Alignm length:
               427
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 75
               

               Conread position:
               1-432
               

               Cow position:
               
               

               Alignm length:
               433
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 132
               

               Conread position:
               1-449
               

               Cow position:
               
               

               Alignm length:
               452
               

               Alignm identity:
               283
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               55, 79
               

               Conread position:
               1-463
               

               Cow position:
               
               

               Alignm length:
               465
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 60
               

               Conread position:
               1-465
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               320, 316
               

               Conread position:
               1-470
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-470
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 137
               

               Conread position:
               1-471
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 142
               

               Conread position:
               1-471
               

               Cow position:
               
               

               Alignm length:
               472
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 149
               

               Conread position:
               1-471
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 71
               

               Conread position:
               1-471
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 143
               

               Conread position:
               1-471
               

               Cow position:
               
               

               Alignm length:
               471
               

               Alignm identity:
               292
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-472
               

               Cow position:
               
               

               Alignm length:
               476
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               318, 302
               

               Conread position:
               1-476
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               325, 318
               

               Conread position:
               1-478
               

               Cow position:
               
               

               Alignm length:
               479
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 75
               

               Conread position:
               1-499
               

               Cow position:
               
               

               Alignm length:
               499
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-509
               

               Cow position:
               
               

               Alignm length:
               512
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 142
               

               Conread position:
               1-509
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 141
               

               Conread position:
               1-509
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               320, 247
               

               Conread position:
               1-509
               

               Cow position:
               
               

               Alignm length:
               509
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-509
               

               Cow position:
               
               

               Alignm length:
               511
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               328, 302
               

               Conread position:
               1-511
               

               Cow position:
               
               

               Alignm length:
               512
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               319, 315
               

               Conread position:
               1-511
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               322
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               76, 59
               

               Conread position:
               1-511
               

               Cow position:
               
               

               Alignm length:
               512
               

               Alignm identity:
               314
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               368, 269
               

               Conread position:
               1-511
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 67
               

               Conread position:
               1-511
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 40
               

               Conread position:
               1-520
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               510, 0
               

               Conread position:
               1-520
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-363
               

               Cow position:
               
               

               Alignm length:
               362
               

               Alignm identity:
               218
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-465
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               303
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               75, 69
               

               Conread position:
               2-511
               

               Cow position:
               
               

               Alignm length:
               511
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 141
               

               Conread position:
               3-301
               

               Cow position:
               
               

               Alignm length:
               299
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-355
               

               Cow position:
               
               

               Alignm length:
               353
               

               Alignm identity:
               224
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               3-440
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               273
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               74, 54
               

               Conread position:
               3-447
               

               Cow position:
               
               

               Alignm length:
               448
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 140
               

               Conread position:
               3-449
               

               Cow position:
               
               

               Alignm length:
               454
               

               Alignm identity:
               294
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               74, 68
               

               Conread position:
               3-449
               

               Cow position:
               
               

               Alignm length:
               450
               

               Alignm identity:
               288
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               79, 101
               

               Conread position:
               3-465
               

               Cow position:
               
               

               Alignm length:
               465
               

               Alignm identity:
               291
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               326, 71
               

               Conread position:
               3-465
               

               Cow position:
               
               

               Alignm length:
               466
               

               Alignm identity:
               284
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               133, 141
               

               Conread position:
               3-470
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               395, 388
               

               Conread position:
               3-471
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-471
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 147
               

               Conread position:
               3-499
               

               Cow position:
               
               

               Alignm length:
               500
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 84
               

               Conread position:
               3-509
               

               Cow position:
               
               

               Alignm length:
               509
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 15
               

               Conread position:
               3-519
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               510, 0
               

               Conread position:
               3-520
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               308
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               487, 0
               

               Conread position:
               3-520
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               322
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               28, 32
               

               Conread position:
               3-520
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               322, 296
               

               Conread position:
               4-386
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               316, 299
               

               Conread position:
               4-447
               

               Cow position:
               
               

               Alignm length:
               445
               

               Alignm identity:
               268
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               135, 139
               

               Conread position:
               4-470
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               321, 299
               

               Conread position:
               4-471
               

               Cow position:
               
               

               Alignm length:
               471
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               308, 299
               

               Conread position:
               4-471
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               4-471
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 166
               

               Conread position:
               4-511
               

               Cow position:
               
               

               Alignm length:
               517
               

               Alignm identity:
               329
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               73, 57
               

               Conread position:
               4-511
               

               Cow position:
               
               

               Alignm length:
               509
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               493, 91
               

               Conread position:
               4-520
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               322
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               310, 299
               

               Conread position:
               4-521
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 136
               

               Conread position:
               5-523
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 84
               

               Conread position:
               6-510
               

               Cow position:
               
               

               Alignm length:
               508
               

               Alignm identity:
               314
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               9, 23
               

               Conread position:
               10-520
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               428, 437
               

               Conread position:
               11-511
               

               Cow position:
               
               

               Alignm length:
               502
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               444, 440
               

               Conread position:
               16-509
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 128
               

               Conread position:
               57-511
               

               Cow position:
               
               

               Alignm length:
               455
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               246, 0
               

               Conread position:
               67-510
               

               Cow position:
               
               

               Alignm length:
               446
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 77
               

               Conread position:
               76-556
               

               Cow position:
               
               

               Alignm length:
               488
               

               Alignm identity:
               308
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               238, 227
               

               Conread position:
               82-471
               

               Cow position:
               
               

               Alignm length:
               391
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 212
               

               Conread position:
               90-511
               

               Cow position:
               
               

               Alignm length:
               423
               

               Alignm identity:
               261
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               49, 53
               

               Conread position:
               94-509
               

               Cow position:
               
               

               Alignm length:
               417
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               226, 13
               

               Conread position:
               96-512
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               268
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               214, 198
               

               Conread position:
               121-483
               

               Cow position:
               
               

               Alignm length:
               365
               

               Alignm identity:
               221
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               246, 52
               

               Conread position:
               123-470
               

               Cow position:
               
               

               Alignm length:
               350
               

               Alignm identity:
               219
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               198, 180
               

               Conread position:
               155-471
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               219
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               8, 43
               

               Conread position:
               158-471
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               151, 145
               

               Conread position:
               182-484
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               44, 172
               

               Conread position:
               229-471
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               34, 23
               

               Conread position:
               244-478
               

               Cow position:
               
               

               Alignm length:
               235
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               334-520
               

               Cow position:
               
               

               Alignm length:
               188
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               16, 0
               
Show alignments to all cow chromosomes.