Cow genome map
| Conread name: | Ss1.1-rdbla0134_b19.5 |
| Conread position: | 1-252 |
| Cow position: | chr2:82800187-82800438 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 65, 55 |
| Conread position: | 1-437 |
| Cow position: | chr2:48689468-48689033 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 295, 64 |
| Conread position: | 1-483 |
| Cow position: | chr2:78754335-78754811 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 107 |
| Conread position: | 1-499 |
| Cow position: | chr2:78754989-78755486 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 312 |
| Conread position: | 1-510 |
| Cow position: | chr2:86465675-86466184 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 316 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 258, 266 |
| Conread position: | 1-520 |
| Cow position: | chr2:78755741-78756263 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 372 |
| Conread position: | 3-462 |
| Cow position: | chr2:5875107-5874648 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 292 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 226, 233 |
| Conread position: | 3-469 |
| Cow position: | chr2:78754253-78754716 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 184 |
| Conread position: | 3-499 |
| Cow position: | chr2:78755577-78756072 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 88 |
| Conread position: | 3-509 |
| Cow position: | chr2:78755827-78756332 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 150 |
| Conread position: | 3-511 |
| Cow position: | chr2:78754503-78754995 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 3-511 |
| Cow position: | chr2:78755075-78755581 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 168 |
| Conread position: | 3-522 |
| Cow position: | chr2:78755243-78755759 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 94 |
| Conread position: | 3-554 |
| Cow position: | chr2:78754823-78755380 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 510, 0 |
| Conread position: | 4-398 |
| Cow position: | chr2:5874518-5874124 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 68, 72 |
| Conread position: | 4-428 |
| Cow position: | chr2:82800022-82800446 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 278 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 73, 63 |
| Conread position: | 4-461 |
| Cow position: | chr2:5874686-5874229 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 42, 64 |
| Conread position: | 4-462 |
| Cow position: | chr2:82799602-82800060 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 281 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 321, 299 |
| Conread position: | 4-465 |
| Cow position: | chr2:82799854-82800315 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 300 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 76, 56 |
| Conread position: | 4-471 |
| Cow position: | chr2:86465594-86466061 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 286 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 73, 51 |
| Conread position: | 4-498 |
| Cow position: | chr2:78755495-78755986 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 19 |
| Conread position: | 4-498 |
| Cow position: | chr2:82799938-82800432 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 304 |
| Conread position: | 4-520 |
| Cow position: | chr2:82799518-82800034 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 321 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 324, 299 |
| Conread position: | 4-523 |
| Cow position: | chr2:78755160-78755677 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 4-595 |
| Cow position: | chr2:82799770-82800366 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 358 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 325, 294 |
| Conread position: | 7-364 |
| Cow position: | chr2:78756084-78756437 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 242 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 75, 30 |
| Conread position: | 13-277 |
| Cow position: | chr2:86465939-86466203 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-511 |
| Cow position: | chr2:78754183-78754675 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 8 |
| Conread position: | 26-509 |
| Cow position: | chr2:78754111-78754589 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 306 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 137, 59 |
| Conread position: | 28-462 |
| Cow position: | chr2:5875166-5874732 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 255, 260 |
| Conread position: | 28-471 |
| Cow position: | chr2:86465282-86465725 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 34-461 |
| Cow position: | chr2:5874824-5874397 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 268 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 105, 119 |
| Conread position: | 36-465 |
| Cow position: | chr2:48689598-48689173 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 14 |
| Conread position: | 37-474 |
| Cow position: | chr2:82799467-82799904 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 276 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 261, 271 |
| Conread position: | 64-464 |
| Cow position: | chr2:86465486-86465886 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 100, 109 |
| Conread position: | 74-511 |
| Cow position: | chr2:78754810-78755247 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 100-500 |
| Cow position: | chr2:5875178-5874778 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 219, 203 |
| Conread position: | 112-425 |
| Cow position: | chr2:86465954-86466265 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 139, 135 |
| Conread position: | 126-471 |
| Cow position: | chr2:86465128-86465473 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 35, 15 |
Show alignments to all cow chromosomes.