Cow genome map


           Conread name:
           Ss1.1-rdbla0134_b19.5
        

               Conread position:
               1-274
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               67, 59
               

               Conread position:
               1-281
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-344
               

               Cow position:
               
               

               Alignm length:
               345
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               154, 137
               

               Conread position:
               1-436
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               273
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               333, 302
               

               Conread position:
               1-437
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               235, 231
               

               Conread position:
               1-437
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-440
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               261
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               307, 317
               

               Conread position:
               1-441
               

               Cow position:
               
               

               Alignm length:
               445
               

               Alignm identity:
               266
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               133, 141
               

               Conread position:
               1-442
               

               Cow position:
               
               

               Alignm length:
               444
               

               Alignm identity:
               275
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               10, 23
               

               Conread position:
               1-455
               

               Cow position:
               
               

               Alignm length:
               457
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 59
               

               Conread position:
               1-464
               

               Cow position:
               
               

               Alignm length:
               464
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-470
               

               Cow position:
               
               

               Alignm length:
               472
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 149
               

               Conread position:
               1-470
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               292, 314
               

               Conread position:
               1-470
               

               Cow position:
               
               

               Alignm length:
               472
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 142
               

               Conread position:
               1-470
               

               Cow position:
               
               

               Alignm length:
               472
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 142
               

               Conread position:
               1-471
               

               Cow position:
               
               

               Alignm length:
               471
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-471
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               296
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               216, 209
               

               Conread position:
               1-471
               

               Cow position:
               
               

               Alignm length:
               472
               

               Alignm identity:
               283
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               30, 35
               

               Conread position:
               1-471
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               295
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               68, 57
               

               Conread position:
               1-475
               

               Cow position:
               
               

               Alignm length:
               478
               

               Alignm identity:
               292
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               97, 84
               

               Conread position:
               1-476
               

               Cow position:
               
               

               Alignm length:
               481
               

               Alignm identity:
               288
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               150, 140
               

               Conread position:
               1-477
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               295
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               162, 183
               

               Conread position:
               1-482
               

               Cow position:
               
               

               Alignm length:
               483
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               236, 228
               

               Conread position:
               1-490
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               303
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               54, 82
               

               Conread position:
               1-497
               

               Cow position:
               
               

               Alignm length:
               498
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 142
               

               Conread position:
               1-505
               

               Cow position:
               
               

               Alignm length:
               507
               

               Alignm identity:
               310
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               328, 313
               

               Conread position:
               1-511
               

               Cow position:
               
               

               Alignm length:
               516
               

               Alignm identity:
               319
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               68, 76
               

               Conread position:
               1-511
               

               Cow position:
               
               

               Alignm length:
               515
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 144
               

               Conread position:
               1-511
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 86
               

               Conread position:
               1-511
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 148
               

               Conread position:
               1-511
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 152
               

               Conread position:
               1-511
               

               Cow position:
               
               

               Alignm length:
               512
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 142
               

               Conread position:
               1-511
               

               Cow position:
               
               

               Alignm length:
               512
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               317, 302
               

               Conread position:
               1-511
               

               Cow position:
               
               

               Alignm length:
               512
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               329, 315
               

               Conread position:
               1-520
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               316
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               389, 394
               

               Conread position:
               1-520
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               508, 500
               

               Conread position:
               1-523
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               326
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               384, 412
               

               Conread position:
               1-541
               

               Cow position:
               
               

               Alignm length:
               546
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 57
               

               Conread position:
               1-557
               

               Cow position:
               
               

               Alignm length:
               563
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               500, 0
               

               Conread position:
               1-595
               

               Cow position:
               
               

               Alignm length:
               602
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               322, 327
               

               Conread position:
               2-358
               

               Cow position:
               
               

               Alignm length:
               361
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               149, 136
               

               Conread position:
               2-435
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               277
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               137, 141
               

               Conread position:
               2-509
               

               Cow position:
               
               

               Alignm length:
               508
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-509
               

               Cow position:
               
               

               Alignm length:
               508
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-511
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 95
               

               Conread position:
               3-469
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               278
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               74, 63
               

               Conread position:
               3-471
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               293
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               52, 73
               

               Conread position:
               3-471
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               218, 237
               

               Conread position:
               3-471
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               298
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               65, 54
               

               Conread position:
               3-520
               

               Cow position:
               
               

               Alignm length:
               518
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-520
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 74
               

               Conread position:
               3-523
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               331
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               66, 55
               

               Conread position:
               3-544
               

               Cow position:
               
               

               Alignm length:
               550
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 57
               

               Conread position:
               4-273
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               133, 144
               

               Conread position:
               4-388
               

               Cow position:
               
               

               Alignm length:
               387
               

               Alignm identity:
               242
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               135, 142
               

               Conread position:
               4-470
               

               Cow position:
               
               

               Alignm length:
               467
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               4-471
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               286
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               25, 20
               

               Conread position:
               4-472
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               278
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               61, 73
               

               Conread position:
               4-474
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               316, 290
               

               Conread position:
               4-499
               

               Cow position:
               
               

               Alignm length:
               502
               

               Alignm identity:
               315
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               65, 58
               

               Conread position:
               4-520
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 56
               

               Conread position:
               4-522
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               323
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               65, 58
               

               Conread position:
               5-461
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               318, 11
               

               Conread position:
               6-516
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               317
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               25, 29
               

               Conread position:
               9-471
               

               Cow position:
               
               

               Alignm length:
               464
               

               Alignm identity:
               278
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               130, 137
               

               Conread position:
               10-471
               

               Cow position:
               
               

               Alignm length:
               463
               

               Alignm identity:
               283
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               297, 282
               

               Conread position:
               10-471
               

               Cow position:
               
               

               Alignm length:
               463
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 139
               

               Conread position:
               11-584
               

               Cow position:
               
               

               Alignm length:
               583
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               312, 301
               

               Conread position:
               13-470
               

               Cow position:
               
               

               Alignm length:
               462
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 47
               

               Conread position:
               16-471
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               286
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               60, 33
               

               Conread position:
               16-511
               

               Cow position:
               
               

               Alignm length:
               503
               

               Alignm identity:
               317
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               256, 238
               

               Conread position:
               16-519
               

               Cow position:
               
               

               Alignm length:
               507
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 153
               

               Conread position:
               19-453
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               268
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               58, 43
               

               Conread position:
               19-471
               

               Cow position:
               
               

               Alignm length:
               457
               

               Alignm identity:
               289
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               71, 66
               

               Conread position:
               22-471
               

               Cow position:
               
               

               Alignm length:
               450
               

               Alignm identity:
               280
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               22-475
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 121
               

               Conread position:
               22-475
               

               Cow position:
               
               

               Alignm length:
               457
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 121
               

               Conread position:
               22-478
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               274
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               237, 248
               

               Conread position:
               26-471
               

               Cow position:
               
               

               Alignm length:
               448
               

               Alignm identity:
               265
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               55, 63
               

               Conread position:
               26-510
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               296
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               303, 293
               

               Conread position:
               34-471
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               295, 283
               

               Conread position:
               37-476
               

               Cow position:
               
               

               Alignm length:
               448
               

               Alignm identity:
               279
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               13, 44
               

               Conread position:
               37-517
               

               Cow position:
               
               

               Alignm length:
               482
               

               Alignm identity:
               289
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               364, 355
               

               Conread position:
               67-489
               

               Cow position:
               
               

               Alignm length:
               428
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 23
               

               Conread position:
               67-489
               

               Cow position:
               
               

               Alignm length:
               428
               

               Alignm identity:
               280
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               30, 23
               

               Conread position:
               69-509
               

               Cow position:
               
               

               Alignm length:
               447
               

               Alignm identity:
               286
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               28, 76
               

               Conread position:
               75-511
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               269
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               231, 219
               

               Conread position:
               76-511
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               263
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               226, 234
               

               Conread position:
               82-520
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               430, 0
               

               Conread position:
               105-499
               

               Cow position:
               
               

               Alignm length:
               396
               

               Alignm identity:
               246
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               222, 212
               

               Conread position:
               106-511
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               221, 210
               

               Conread position:
               112-511
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               248
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               27, 34
               

               Conread position:
               121-511
               

               Cow position:
               
               

               Alignm length:
               392
               

               Alignm identity:
               245
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               204, 188
               

               Conread position:
               165-511
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               216
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               172-511
               

               Cow position:
               
               

               Alignm length:
               344
               

               Alignm identity:
               215
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               142, 131
               

               Conread position:
               229-470
               

               Cow position:
               
               

               Alignm length:
               242
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               229-502
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               104, 112
               

               Conread position:
               241-482
               

               Cow position:
               
               

               Alignm length:
               243
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               86, 77
               

               Conread position:
               244-483
               

               Cow position:
               
               

               Alignm length:
               243
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               16, 23
               

               Conread position:
               244-520
               

               Cow position:
               
               

               Alignm length:
               277
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               15, 0
               
Show alignments to all cow chromosomes.