Cow genome map
| Conread name: | Ss1.1-rdbla0134_b19.5 |
| Conread position: | 1-253 |
| Cow position: | chr23:25660476-25660728 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 140, 150 |
| Conread position: | 1-281 |
| Cow position: | chr23:24546921-24546641 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 147, 139 |
| Conread position: | 1-301 |
| Cow position: | chr23:24522495-24522195 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-372 |
| Cow position: | chr23:24626381-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 325, 316 |
| Conread position: | 1-420 |
| Cow position: | chr23:25698499-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 91, 102 |
| Conread position: | 1-437 |
| Cow position: | chr23:24547089-24546653 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 302 |
| Conread position: | 1-440 |
| Cow position: | chr23:24535972-24535533 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 273 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-471 |
| Cow position: | chr23:24547257-24546787 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 55 |
| Conread position: | 1-474 |
| Cow position: | chr23:25660224-25660697 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 296 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 84, 88 |
| Conread position: | 1-485 |
| Cow position: | chr23:25626604-25627089 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 58 |
| Conread position: | 1-488 |
| Cow position: | chr23:24639289-24639776 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 1-510 |
| Cow position: | chr23:24547173-24546664 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-511 |
| Cow position: | chr23:25626187-25626694 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 0 |
| Conread position: | 1-511 |
| Cow position: | chr23:25626355-25626862 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 180 |
| Conread position: | 1-520 |
| Cow position: | chr23:24560817-24560298 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 80 |
| Conread position: | 1-526 |
| Cow position: | chr23:24560649-24560122 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 512, 0 |
| Conread position: | 2-365 |
| Cow position: | chr23:24639710-24640073 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 323, 292 |
| Conread position: | 2-499 |
| Cow position: | chr23:25723969-25723475 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 291 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 347, 262 |
| Conread position: | 2-583 |
| Cow position: | chr23:24522825-24522243 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 366 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 7, 15 |
| Conread position: | 4-297 |
| Cow position: | chr23:24654109-24654402 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 58, 37 |
| Conread position: | 4-439 |
| Cow position: | chr23:25660311-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 277 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 65, 52 |
| Conread position: | 4-449 |
| Cow position: | chr23:24639628-24640073 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 316 |
| Conread position: | 4-489 |
| Cow position: | chr23:24522657-24522175 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 55 |
| Conread position: | 4-511 |
| Cow position: | chr23:24639544-24640051 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 308 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 302, 290 |
| Conread position: | 6-440 |
| Cow position: | chr23:24626302-24626735 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 297 |
| Conread position: | 6-522 |
| Cow position: | chr23:25626529-25627043 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 17 |
| Conread position: | 8-302 |
| Cow position: | chr23:24521982-24521688 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 68, 54 |
| Conread position: | 8-451 |
| Cow position: | chr23:25724131-25723689 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 277 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 298, 312 |
| Conread position: | 8-475 |
| Cow position: | chr23:25626026-25626492 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 290 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 464, 0 |
| Conread position: | 16-499 |
| Cow position: | chr23:25698568-25698085 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 298 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 161, 171 |
| Conread position: | 16-511 |
| Cow position: | chr23:24639388-24639883 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 126 |
| Conread position: | 22-375 |
| Cow position: | chr23:24654043-24654396 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 116, 122 |
| Conread position: | 22-471 |
| Cow position: | chr23:24535867-24535417 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 298, 281 |
| Conread position: | 22-499 |
| Cow position: | chr23:24547320-24546843 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 118 |
| Conread position: | 22-511 |
| Cow position: | chr23:24560712-24560223 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 121 |
| Conread position: | 23-482 |
| Cow position: | chr23:25698645-25698186 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 46, 53 |
| Conread position: | 23-511 |
| Cow position: | chr23:24560879-24560391 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 303 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 141, 150 |
| Conread position: | 28-477 |
| Cow position: | chr23:25660167-25660616 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 46, 32 |
| Conread position: | 33-483 |
| Cow position: | chr23:24639237-24639687 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 282 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 105, 110 |
| Conread position: | 34-478 |
| Cow position: | chr23:24536023-24535579 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 280 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 130, 135 |
| Conread position: | 75-483 |
| Cow position: | chr23:25626009-25626417 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 64, 69 |
| Conread position: | 83-511 |
| Cow position: | chr23:24547342-24546915 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 7 |
| Conread position: | 91-499 |
| Cow position: | chr23:25724132-25723724 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 262 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 48, 52 |
| Conread position: | 94-520 |
| Cow position: | chr23:24626306-24626732 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-520 |
| Cow position: | chr23:25698657-25698232 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 41, 45 |
| Conread position: | 105-439 |
| Cow position: | chr23:24654042-24654376 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 123, 105 |
| Conread position: | 111-489 |
| Cow position: | chr23:25660166-25660544 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 28, 32 |
| Conread position: | 111-511 |
| Cow position: | chr23:24639231-24639631 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 156, 148 |
| Conread position: | 120-511 |
| Cow position: | chr23:24626251-24626639 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 259 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 159-533 |
| Cow position: | chr23:25626009-25626385 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 249 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 148, 135 |
| Conread position: | 161-470 |
| Cow position: | chr23:25660130-25660441 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 5, 135 |
| Conread position: | 163-499 |
| Cow position: | chr23:24536061-24535726 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 144, 11 |
| Conread position: | 164-511 |
| Cow position: | chr23:24560906-24560559 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 173-538 |
| Cow position: | chr23:24654024-24654392 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 12, 123 |
| Conread position: | 205-505 |
| Cow position: | chr23:25724102-25723802 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 5 |
| Conread position: | 274-580 |
| Cow position: | chr23:24547320-24547008 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 28, 20 |
Show alignments to all cow chromosomes.