Cow genome map

Conread name: Ss1.1-rdbla0134_b19.5

Conread position: 1-211
Cow position: chr25:34769464-34769254 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 138
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-269
Cow position: chr25:36801699-36801967 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 172
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 82, 78

Conread position: 1-297
Cow position: chr25:33157065-33156770 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 190
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 70, 82

Conread position: 1-336
Cow position: chr25:33145086-33145421 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 207
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 74, 63

Conread position: 1-351
Cow position: chr25:33127874-33128224 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 222
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 1-425
Cow position: chr25:23420455-23420879 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-434
Cow position: chr25:33127790-33128223 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-440
Cow position: chr25:34433596-34434029 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 269
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 162, 11

Conread position: 1-446
Cow position: chr25:33157233-33156788 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 59

Conread position: 1-461
Cow position: chr25:33157401-33156941 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 329, 321

Conread position: 1-470
Cow position: chr25:33157317-33156848 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 299
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 74, 59

Conread position: 1-474
Cow position: chr25:34769968-34769495 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-484
Cow position: chr25:34447262-34447743 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 328, 317

Conread position: 1-506
Cow position: chr25:33299391-33299889 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 57

Conread position: 1-511
Cow position: chr25:326737-327253 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 318
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 106, 92

Conread position: 1-511
Cow position: chr25:34447094-34447604 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 409, 391

Conread position: 1-511
Cow position: chr25:34769884-34769374 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 79

Conread position: 1-511
Cow position: chr25:34770052-34769542 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-511
Cow position: chr25:34770136-34769626 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 75

Conread position: 1-520
Cow position: chr25:34447010-34447529 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 167

Conread position: 1-520
Cow position: chr25:34769800-34769279 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 302

Conread position: 1-595
Cow position: chr25:33298971-33299570 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 293

Conread position: 2-465
Cow position: chr25:36801448-36801911 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 86

Conread position: 2-498
Cow position: chr25:34713939-34714435 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 308
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 75, 62

Conread position: 2-511
Cow position: chr25:33127707-33128216 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 301

Conread position: 3-320
Cow position: chr25:33305161-33304849 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 207
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 117, 44

Conread position: 3-414
Cow position: chr25:34769630-34769219 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 54

Conread position: 3-464
Cow position: chr25:36800873-36801334 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 291

Conread position: 3-472
Cow position: chr25:36800705-36801174 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 64

Conread position: 3-477
Cow position: chr25:34714024-34714498 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 300
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 51, 40

Conread position: 3-499
Cow position: chr25:33299141-33299637 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 322, 315

Conread position: 3-499
Cow position: chr25:36801209-36801693 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 312
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 69, 73

Conread position: 3-509
Cow position: chr25:33298637-33299143 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 64

Conread position: 3-510
Cow position: chr25:33298805-33299312 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 409, 405

Conread position: 3-511
Cow position: chr25:36800619-36801129 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 309

Conread position: 3-518
Cow position: chr25:33305972-33305460 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 437, 27

Conread position: 3-544
Cow position: chr25:33299309-33299851 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 73

Conread position: 4-470
Cow position: chr25:326572-327044 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 296
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 67, 73

Conread position: 4-471
Cow position: chr25:25652347-25652814 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 274
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 73, 56

Conread position: 4-474
Cow position: chr25:33305244-33304784 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 304
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 199, 135

Conread position: 4-510
Cow position: chr25:33299226-33299732 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 139

Conread position: 4-511
Cow position: chr25:33144924-33145428 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 318
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 79, 75

Conread position: 4-520
Cow position: chr25:33299058-33299576 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 306

Conread position: 4-526
Cow position: chr25:34447181-34447705 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 348

Conread position: 4-578
Cow position: chr25:33298722-33299302 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 304

Conread position: 5-480
Cow position: chr25:34713860-34714333 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 295
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 132, 11

Conread position: 5-511
Cow position: chr25:33305726-33305241 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 319
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 78, 82

Conread position: 5-519
Cow position: chr25:33305410-33304899 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 92

Conread position: 6-438
Cow position: chr25:34732615-34732181 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 260
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 133, 144

Conread position: 6-470
Cow position: chr25:23420376-23420840 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 138

Conread position: 8-426
Cow position: chr25:346443-346861 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 250
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 54, 47

Conread position: 8-500
Cow position: chr25:33298894-33299386 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 9-580
Cow position: chr25:36801371-36801948 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 353
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 80, 72

Conread position: 10-471
Cow position: chr25:33144846-33145304 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 293
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 300, 191

Conread position: 10-473
Cow position: chr25:36801539-36802000 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 134

Conread position: 10-482
Cow position: chr25:33298559-33299032 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 308

Conread position: 16-511
Cow position: chr25:33298482-33298977 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 219

Conread position: 16-519
Cow position: chr25:22235832-22236337 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 307
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 60, 42

Conread position: 16-519
Cow position: chr25:36800802-36801307 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 490, 0

Conread position: 28-499
Cow position: chr25:34446953-34447424 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 69

Conread position: 30-511
Cow position: chr25:23420316-23420797 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 120

Conread position: 32-434
Cow position: chr25:33145033-33145435 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 250
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 297, 271

Conread position: 33-471
Cow position: chr25:33157453-33157015 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 270

Conread position: 33-471
Cow position: chr25:34446874-34447312 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 271
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 39, 80

Conread position: 34-383
Cow position: chr25:326518-326867 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 211
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 316, 309

Conread position: 48-465
Cow position: chr25:326448-326865 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 257
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 53, 60

Conread position: 67-399
Cow position: chr25:18642201-18641866 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 212
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 72, 93

Conread position: 67-478
Cow position: chr25:33157503-33157092 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 265
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 248, 236

Conread position: 74-499
Cow position: chr25:34713758-34714184 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 257
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 5, 70

Conread position: 75-511
Cow position: chr25:34433502-34433934 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 262
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 220, 104

Conread position: 80-473
Cow position: chr25:36800528-36800923 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 252
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 15, 238

Conread position: 88-509
Cow position: chr25:326404-326825 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 270
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 20, 45

Conread position: 90-420
Cow position: chr25:366718-367048 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 207
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 60, 49

Conread position: 90-517
Cow position: chr25:346441-346868 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 267
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 419, 409

Conread position: 97-465
Cow position: chr25:22235829-22236197 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 228
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 202, 213

Conread position: 97-474
Cow position: chr25:36800463-36800840 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 235
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 116, 112

Conread position: 100-520
Cow position: chr25:33127721-33128141 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 121-451
Cow position: chr25:326947-327277 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 220
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 18, 29

Conread position: 121-516
Cow position: chr25:326353-326748 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 246
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 71, 96

Conread position: 158-471
Cow position: chr25:34770149-34769834 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 208
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 22, 0

Conread position: 165-475
Cow position: chr25:33306394-33306093 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 198
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 170-510
Cow position: chr25:33298470-33298808 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 219
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 16, 0

Conread position: 187-513
Cow position: chr25:34732098-34731772 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 208
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 107, 125

Conread position: 210-540
Cow position: chr25:23420328-23420660 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 217
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 89, 109

Conread position: 229-469
Cow position: chr25:34432984-34433224 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 160
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 229-511
Cow position: chr25:18642207-18641922 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 182
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 141, 179

Conread position: 235-509
Cow position: chr25:366779-367053 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 177
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 48, 53

Conread position: 238-520
Cow position: chr25:34770151-34769869 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 188
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 68, 77

Conread position: 349-520
Cow position: chr25:34433020-34433193 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 155, 0

Show alignments to all cow chromosomes.