Cow genome map
| Conread name: | Ss1.1-rdbla0134_b19.5 |
| Conread position: | 1-357 |
| Cow position: | chr28:33210300-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 126, 142 |
| Conread position: | 1-365 |
| Cow position: | chr28:34696236-34696598 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 1-431 |
| Cow position: | chr28:34673511-34673945 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 55, 65 |
| Conread position: | 1-465 |
| Cow position: | chr28:9298722-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 70 |
| Conread position: | 1-472 |
| Cow position: | chr28:7757488-7757959 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 65 |
| Conread position: | 1-483 |
| Cow position: | chr28:9290076-9290552 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 47 |
| Conread position: | 1-511 |
| Cow position: | chr28:7810420-7810921 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 110 |
| Conread position: | 1-519 |
| Cow position: | chr28:7757992-7758496 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 500, 302 |
| Conread position: | 2-547 |
| Cow position: | chr28:9299056-9299589 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 499, 139 |
| Conread position: | 3-199 |
| Cow position: | chr28:7810749-7810945 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-281 |
| Cow position: | chr28:7810665-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 136, 141 |
| Conread position: | 3-291 |
| Cow position: | chr28:7758566-7758854 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 131, 140 |
| Conread position: | 3-418 |
| Cow position: | chr28:9299295-9299707 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 259 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 303, 275 |
| Conread position: | 3-569 |
| Cow position: | chr28:7757826-7758392 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 325 |
| Conread position: | 3-580 |
| Cow position: | chr28:9253009-9253592 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 22 |
| Conread position: | 3-594 |
| Cow position: | chr28:7757406-7758002 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 314 |
| Conread position: | 4-365 |
| Cow position: | chr28:7810582-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 148, 133 |
| Conread position: | 4-438 |
| Cow position: | chr28:9253178-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-459 |
| Cow position: | chr28:7758399-7758854 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 426, 379 |
| Conread position: | 4-471 |
| Cow position: | chr28:7757659-7758126 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 306 |
| Conread position: | 4-471 |
| Cow position: | chr28:34696071-34696538 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 66, 73 |
| Conread position: | 4-472 |
| Cow position: | chr28:7757743-7758211 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 139 |
| Conread position: | 4-473 |
| Cow position: | chr28:9290245-9290710 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 295 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 4-489 |
| Cow position: | chr28:9290163-9290642 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 45 |
| Conread position: | 4-497 |
| Cow position: | chr28:34695903-34696396 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 289 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 68, 73 |
| Conread position: | 4-509 |
| Cow position: | chr28:7810339-7810835 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 192 |
| Conread position: | 4-509 |
| Cow position: | chr28:9298643-9299143 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 22 |
| Conread position: | 4-511 |
| Cow position: | chr28:7757575-7758082 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 139 |
| Conread position: | 4-511 |
| Cow position: | chr28:9253094-9253601 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 313 |
| Conread position: | 4-511 |
| Cow position: | chr28:11333894-11333393 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 318 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 60, 54 |
| Conread position: | 4-520 |
| Cow position: | chr28:7758247-7758747 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 69 |
| Conread position: | 4-557 |
| Cow position: | chr28:11333642-11333096 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 337 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 300, 176 |
| Conread position: | 5-520 |
| Cow position: | chr28:9252845-9253360 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 47 |
| Conread position: | 6-511 |
| Cow position: | chr28:7757249-7757746 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 10 |
| Conread position: | 16-447 |
| Cow position: | chr28:33210231-33210663 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 67 |
| Conread position: | 16-511 |
| Cow position: | chr28:7758327-7758821 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 452, 0 |
| Conread position: | 16-511 |
| Cow position: | chr28:9252938-9253433 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 301 |
| Conread position: | 16-519 |
| Cow position: | chr28:11334050-11333545 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 315 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 30, 52 |
| Conread position: | 16-522 |
| Cow position: | chr28:9299225-9299726 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 309 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 385, 7 |
| Conread position: | 22-440 |
| Cow position: | chr28:34673364-34673782 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 275, 298 |
| Conread position: | 26-500 |
| Cow position: | chr28:34695841-34696315 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 32-509 |
| Cow position: | chr28:7757351-7757828 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-449 |
| Cow position: | chr28:7810527-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 54 |
| Conread position: | 33-519 |
| Cow position: | chr28:7810284-7810763 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 39-463 |
| Cow position: | chr28:9289782-9290202 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 203, 99 |
| Conread position: | 92-427 |
| Cow position: | chr28:34696243-34696578 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 47, 51 |
| Conread position: | 92-511 |
| Cow position: | chr28:9289913-9290330 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 274 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 66, 39 |
| Conread position: | 95-479 |
| Cow position: | chr28:34673353-34673737 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 49, 44 |
| Conread position: | 97-471 |
| Cow position: | chr28:33210228-33210603 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 46 |
| Conread position: | 106-523 |
| Cow position: | chr28:11334212-11333793 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 192, 221 |
| Conread position: | 117-520 |
| Cow position: | chr28:7810284-7810680 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 266 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 20, 26 |
| Conread position: | 265-511 |
| Cow position: | chr28:9298567-9298812 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 29, 47 |
Show alignments to all cow chromosomes.