Cow genome map
| Conread name: | Ss1.1-rdbla0134_b19.5 |
| Conread position: | 1-363 |
| Cow position: | chr3:68046009-68046369 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 137, 149 |
| Conread position: | 1-420 |
| Cow position: | chr3:77351002-77350592 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 34 |
| Conread position: | 1-470 |
| Cow position: | chr3:68027080-68027549 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 298 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 27, 23 |
| Conread position: | 1-510 |
| Cow position: | chr3:68027248-68027757 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 317 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 55, 73 |
| Conread position: | 1-511 |
| Cow position: | chr3:62722085-62721575 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 57 |
| Conread position: | 1-519 |
| Cow position: | chr3:77351168-77350662 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 321 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 190, 64 |
| Conread position: | 1-520 |
| Cow position: | chr3:62722253-62721734 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 57 |
| Conread position: | 1-520 |
| Cow position: | chr3:68045757-68046278 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 329 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 74, 54 |
| Conread position: | 3-436 |
| Cow position: | chr3:68045927-68046358 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 275 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 415, 0 |
| Conread position: | 3-509 |
| Cow position: | chr3:62722167-62721661 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 395, 390 |
| Conread position: | 3-511 |
| Cow position: | chr3:62742269-62742771 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 317 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 85, 76 |
| Conread position: | 3-528 |
| Cow position: | chr3:62742851-62743356 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 340 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 30, 56 |
| Conread position: | 3-580 |
| Cow position: | chr3:62742767-62743329 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 231 |
| Conread position: | 4-267 |
| Cow position: | chr3:62721830-62721567 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-518 |
| Cow position: | chr3:68045844-68046358 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 58 |
| Conread position: | 5-428 |
| Cow position: | chr3:62721995-62721574 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 11 |
| Conread position: | 5-470 |
| Cow position: | chr3:68045593-68046058 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 295 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 60, 50 |
| Conread position: | 7-465 |
| Cow position: | chr3:68027002-68027460 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 311, 301 |
| Conread position: | 10-262 |
| Cow position: | chr3:68027511-68027761 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 11-454 |
| Cow position: | chr3:68027342-68027784 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 387, 379 |
| Conread position: | 16-510 |
| Cow position: | chr3:62722322-62721828 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 50 |
| Conread position: | 16-520 |
| Cow position: | chr3:68027179-68027683 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 309 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 40, 55 |
| Conread position: | 33-467 |
| Cow position: | chr3:62743033-62743462 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 42, 23 |
| Conread position: | 76-509 |
| Cow position: | chr3:68045580-68046013 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 61, 74 |
| Conread position: | 89-440 |
| Cow position: | chr3:62742687-62743032 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 194, 51 |
| Conread position: | 119-440 |
| Cow position: | chr3:77351302-77350983 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 126 |
| Conread position: | 140-471 |
| Cow position: | chr3:68045560-68045891 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 174, 163 |
| Conread position: | 226-534 |
| Cow position: | chr3:62722364-62722054 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 236-520 |
| Cow position: | chr3:62742250-62742533 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 58 |
| Conread position: | 238-471 |
| Cow position: | chr3:68026981-68027214 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 65 |
| Conread position: | 249-470 |
| Cow position: | chr3:68027076-68027297 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.