Cow genome map
| Conread name: | Ss1.1-rdbla0134_b19.5 |
| Conread position: | 1-219 |
| Cow position: | chr7:1440046-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 1-342 |
| Cow position: | chr7:11600779-11600438 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 305, 293 |
| Conread position: | 1-394 |
| Cow position: | chr7:18390402-18390795 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 250 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-431 |
| Cow position: | chr7:11600863-11600432 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 275 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 160, 153 |
| Conread position: | 1-470 |
| Cow position: | chr7:1015011-1015482 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 54 |
| Conread position: | 1-470 |
| Cow position: | chr7:1439796-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 23 |
| Conread position: | 1-471 |
| Cow position: | chr7:3180105-3180575 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 220 |
| Conread position: | 1-471 |
| Cow position: | chr7:8277920-8278390 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 298 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 74, 61 |
| Conread position: | 1-471 |
| Cow position: | chr7:11600947-11600477 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 293 |
| Conread position: | 1-471 |
| Cow position: | chr7:11601115-11600645 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-472 |
| Cow position: | chr7:42878952-42878481 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 316 |
| Conread position: | 1-474 |
| Cow position: | chr7:8277752-8278225 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 296 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 72, 54 |
| Conread position: | 1-497 |
| Cow position: | chr7:3179937-3180433 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 52 |
| Conread position: | 1-497 |
| Cow position: | chr7:42879204-42878708 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 310 |
| Conread position: | 1-509 |
| Cow position: | chr7:3180021-3180529 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 54 |
| Conread position: | 1-509 |
| Cow position: | chr7:3180357-3180864 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 302 |
| Conread position: | 1-511 |
| Cow position: | chr7:1014675-1015185 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 53 |
| Conread position: | 1-511 |
| Cow position: | chr7:1014927-1015437 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 67 |
| Conread position: | 1-511 |
| Cow position: | chr7:1439625-1440136 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 325 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 51, 18 |
| Conread position: | 1-511 |
| Cow position: | chr7:3179769-3180279 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 56 |
| Conread position: | 1-511 |
| Cow position: | chr7:8277416-8277926 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 303 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 179, 149 |
| Conread position: | 1-512 |
| Cow position: | chr7:18390234-18390745 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 34 |
| Conread position: | 1-519 |
| Cow position: | chr7:3180189-3180709 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 139 |
| Conread position: | 1-520 |
| Cow position: | chr7:1014843-1015362 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 398, 393 |
| Conread position: | 1-520 |
| Cow position: | chr7:3180273-3180792 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 54 |
| Conread position: | 1-520 |
| Cow position: | chr7:11601031-11600512 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 327 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 74, 55 |
| Conread position: | 1-522 |
| Cow position: | chr7:1439458-1439981 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 332 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 136, 129 |
| Conread position: | 1-523 |
| Cow position: | chr7:42878784-42878258 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 315 |
| Conread position: | 2-520 |
| Cow position: | chr7:3179854-3180372 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-520 |
| Cow position: | chr7:42879035-42878515 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 499, 0 |
| Conread position: | 3-399 |
| Cow position: | chr7:1438323-1438719 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 125, 140 |
| Conread position: | 3-471 |
| Cow position: | chr7:8325479-8325947 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 289 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 62, 73 |
| Conread position: | 3-472 |
| Cow position: | chr7:8277838-8278307 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 301 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 28, 32 |
| Conread position: | 3-472 |
| Cow position: | chr7:18390320-18390789 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 425, 443 |
| Conread position: | 3-475 |
| Cow position: | chr7:8242873-8243345 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 281 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 67, 74 |
| Conread position: | 3-475 |
| Cow position: | chr7:8243293-8243764 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 291 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 59, 74 |
| Conread position: | 3-476 |
| Cow position: | chr7:8325059-8325532 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 285 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 157, 138 |
| Conread position: | 3-477 |
| Cow position: | chr7:8325647-8326121 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 302 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 70, 62 |
| Conread position: | 3-509 |
| Cow position: | chr7:1014431-1014931 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 220 |
| Conread position: | 3-509 |
| Cow position: | chr7:42879118-42878612 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 314 |
| Conread position: | 3-511 |
| Cow position: | chr7:8277334-8277842 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 311 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 49, 70 |
| Conread position: | 3-511 |
| Cow position: | chr7:8324891-8325399 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 317 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 50, 70 |
| Conread position: | 3-511 |
| Cow position: | chr7:8325143-8325651 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 319 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 58, 73 |
| Conread position: | 3-511 |
| Cow position: | chr7:8325395-8325903 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 304 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 61, 70 |
| Conread position: | 3-511 |
| Cow position: | chr7:42878866-42878358 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 314 |
| Conread position: | 4-476 |
| Cow position: | chr7:8243545-8244015 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 284 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 56, 66 |
| Conread position: | 4-520 |
| Cow position: | chr7:1014348-1014858 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 327 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 5-402 |
| Cow position: | chr7:1439885-1440279 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 155, 11 |
| Conread position: | 6-325 |
| Cow position: | chr7:1438410-1438728 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 311, 0 |
| Conread position: | 6-472 |
| Cow position: | chr7:8277587-8278055 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 290 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 6, 67 |
| Conread position: | 7-471 |
| Cow position: | chr7:18390156-18390620 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 286 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 295, 303 |
| Conread position: | 10-470 |
| Cow position: | chr7:8324730-8325190 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 287 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 158, 129 |
| Conread position: | 10-580 |
| Cow position: | chr7:1014524-1015092 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 354 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 228, 6 |
| Conread position: | 13-476 |
| Cow position: | chr7:8324818-8325280 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 296 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 40, 10 |
| Conread position: | 19-482 |
| Cow position: | chr7:18390000-18390463 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 289 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 120, 134 |
| Conread position: | 22-483 |
| Cow position: | chr7:1438092-1438551 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 287 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 23-470 |
| Cow position: | chr7:11601177-11600730 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 277 |
| Conread position: | 36-509 |
| Cow position: | chr7:42879253-42878780 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 279 |
| Conread position: | 70-470 |
| Cow position: | chr7:1438306-1438706 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 67, 73 |
| Conread position: | 75-509 |
| Cow position: | chr7:3179759-3180193 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 219 |
| Conread position: | 82-471 |
| Cow position: | chr7:11601202-11600813 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 245, 241 |
| Conread position: | 82-520 |
| Cow position: | chr7:1014672-1015110 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 79 |
| Conread position: | 89-474 |
| Cow position: | chr7:18390154-18390539 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 93-509 |
| Cow position: | chr7:42879278-42878864 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 100-476 |
| Cow position: | chr7:8324736-8325112 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 82, 41 |
| Conread position: | 119-519 |
| Cow position: | chr7:18390016-18390418 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 26, 31 |
| Conread position: | 133-511 |
| Cow position: | chr7:42879324-42878946 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 55 |
| Conread position: | 165-449 |
| Cow position: | chr7:11601203-11600919 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 165-509 |
| Cow position: | chr7:1014257-1014601 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 150, 138 |
| Conread position: | 166-392 |
| Cow position: | chr7:11434502-11434276 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 151, 137 |
| Conread position: | 235-470 |
| Cow position: | chr7:3179751-3179986 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 238-580 |
| Cow position: | chr7:42879303-42878955 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 89, 79 |
| Conread position: | 241-474 |
| Cow position: | chr7:11434511-11434278 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 243-518 |
| Cow position: | chr7:1439448-1439726 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 83, 74 |
| Conread position: | 264-518 |
| Cow position: | chr7:8277259-8277513 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 41, 46 |
| Conread position: | 331-520 |
| Cow position: | chr7:1439452-1439640 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 136, 0 |
Show alignments to all cow chromosomes.