Cow genome map
| Conread name: | Ss1.1-rdbla0134_b19.5 |
| Conread position: | 1-448 |
| Cow position: | chr8:55581314-55581762 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 274 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 63, 45 |
| Conread position: | 1-463 |
| Cow position: | chr8:55580894-55581356 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-471 |
| Cow position: | chr8:46816369-46816839 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 302 |
| Conread position: | 1-471 |
| Cow position: | chr8:46816621-46817091 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 168 |
| Conread position: | 1-474 |
| Cow position: | chr8:48407390-48406917 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 75 |
| Conread position: | 1-488 |
| Cow position: | chr8:55581230-55581717 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 301 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 153, 139 |
| Conread position: | 1-489 |
| Cow position: | chr8:48407306-48406818 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 351 |
| Conread position: | 1-497 |
| Cow position: | chr8:45201510-45202006 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 142 |
| Conread position: | 1-509 |
| Cow position: | chr8:46816201-46816709 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-509 |
| Cow position: | chr8:46816789-46817297 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 40 |
| Conread position: | 1-509 |
| Cow position: | chr8:55581146-55581654 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 142 |
| Conread position: | 1-511 |
| Cow position: | chr8:46816285-46816795 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 23 |
| Conread position: | 1-511 |
| Cow position: | chr8:46816705-46817215 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-511 |
| Cow position: | chr8:48407054-48406544 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 319 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 138, 145 |
| Conread position: | 1-518 |
| Cow position: | chr8:48407474-48406955 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 150 |
| Conread position: | 1-520 |
| Cow position: | chr8:46816117-46816636 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-520 |
| Cow position: | chr8:46816453-46816972 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 142 |
| Conread position: | 1-520 |
| Cow position: | chr8:48406886-48406365 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 326 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 74, 57 |
| Conread position: | 1-520 |
| Cow position: | chr8:48407138-48406617 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 321 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 63, 54 |
| Conread position: | 1-526 |
| Cow position: | chr8:46816873-46817397 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 80 |
| Conread position: | 1-533 |
| Cow position: | chr8:45201258-45201792 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 316 |
| Conread position: | 3-471 |
| Cow position: | chr8:55580980-55581448 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 21 |
| Conread position: | 3-509 |
| Cow position: | chr8:46816539-46817045 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 65 |
| Conread position: | 3-511 |
| Cow position: | chr8:45201092-45201600 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 291 |
| Conread position: | 3-511 |
| Cow position: | chr8:45201344-45201852 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 291 |
| Conread position: | 3-511 |
| Cow position: | chr8:46816035-46816543 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 65 |
| Conread position: | 3-518 |
| Cow position: | chr8:45201428-45201944 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 510, 0 |
| Conread position: | 3-595 |
| Cow position: | chr8:45201176-45201773 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 63 |
| Conread position: | 4-511 |
| Cow position: | chr8:48407555-48407048 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 313 |
| Conread position: | 8-511 |
| Cow position: | chr8:48407635-48407132 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 312 |
| Conread position: | 9-520 |
| Cow position: | chr8:45201016-45201526 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 7 |
| Conread position: | 9-580 |
| Cow position: | chr8:46815957-46816534 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 501, 0 |
| Conread position: | 22-509 |
| Cow position: | chr8:46815883-46816373 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 298 |
| Conread position: | 26-520 |
| Cow position: | chr8:55580835-55581329 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 42 |
| Conread position: | 58-523 |
| Cow position: | chr8:46815676-46816137 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 290 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 81, 85 |
| Conread position: | 67-509 |
| Cow position: | chr8:45200820-45201262 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 283 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 115, 81 |
| Conread position: | 82-533 |
| Cow position: | chr8:48407645-48407192 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 419, 0 |
| Conread position: | 88-509 |
| Cow position: | chr8:45201011-45201430 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 14 |
| Conread position: | 96-520 |
| Cow position: | chr8:55580736-55581161 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 9, 41 |
| Conread position: | 97-449 |
| Cow position: | chr8:48406706-48406354 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 223, 213 |
| Conread position: | 100-594 |
| Cow position: | chr8:45200937-45201436 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 66 |
| Conread position: | 117-511 |
| Cow position: | chr8:45200786-45201180 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 257 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 93, 99 |
| Conread position: | 133-440 |
| Cow position: | chr8:48407675-48407371 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 47, 6 |
| Conread position: | 237-511 |
| Cow position: | chr8:48407658-48407384 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 74, 57 |
| Conread position: | 286-509 |
| Cow position: | chr8:6958059-6957836 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.