Cow genome map
| Conread name: | Ss1.1-rdbla0134_b19.5 |
| Conread position: | 1-205 |
| Cow position: | chrX:29044852-29044648 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-280 |
| Cow position: | chrX:29044936-29044657 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-361 |
| Cow position: | chrX:29045755-29045397 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 1-368 |
| Cow position: | chrX:25310214-25310581 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-427 |
| Cow position: | chrX:13826708-13826282 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 63, 67 |
| Conread position: | 1-440 |
| Cow position: | chrX:29045104-29044664 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 435, 0 |
| Conread position: | 1-471 |
| Cow position: | chrX:25325179-25324709 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 302 |
| Conread position: | 1-483 |
| Cow position: | chrX:25324675-25324197 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 302 |
| Conread position: | 1-509 |
| Cow position: | chrX:25325431-25324923 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-509 |
| Cow position: | chrX:25325515-25325007 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 142 |
| Conread position: | 1-520 |
| Cow position: | chrX:25324759-25324241 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 510, 0 |
| Conread position: | 1-520 |
| Cow position: | chrX:25325263-25324742 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 500, 0 |
| Conread position: | 1-520 |
| Cow position: | chrX:25325683-25325162 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 315 |
| Conread position: | 1-520 |
| Cow position: | chrX:25325767-25325248 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 142 |
| Conread position: | 1-530 |
| Cow position: | chrX:25325095-25324565 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 321 |
| Conread position: | 1-533 |
| Cow position: | chrX:25309794-25310328 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 55 |
| Conread position: | 2-511 |
| Cow position: | chrX:29045187-29044678 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 2-520 |
| Cow position: | chrX:25325598-25325078 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 508, 0 |
| Conread position: | 3-364 |
| Cow position: | chrX:29045018-29044657 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-449 |
| Cow position: | chrX:25310132-25310578 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 136 |
| Conread position: | 3-509 |
| Cow position: | chrX:25325345-25324839 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 58 |
| Conread position: | 3-509 |
| Cow position: | chrX:29045270-29044764 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-511 |
| Cow position: | chrX:25309880-25310388 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 133 |
| Conread position: | 3-511 |
| Cow position: | chrX:25310048-25310556 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 232 |
| Conread position: | 3-518 |
| Cow position: | chrX:25324841-25324326 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 65 |
| Conread position: | 3-584 |
| Cow position: | chrX:25324925-25324338 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 515, 0 |
| Conread position: | 4-479 |
| Cow position: | chrX:25309713-25310187 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 21 |
| Conread position: | 4-483 |
| Cow position: | chrX:13826789-13826309 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 65, 39 |
| Conread position: | 4-543 |
| Cow position: | chrX:25309965-25310509 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 295 |
| Conread position: | 9-509 |
| Cow position: | chrX:25325843-25325343 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 309 |
| Conread position: | 16-488 |
| Cow position: | chrX:13826861-13826389 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 215, 220 |
| Conread position: | 28-520 |
| Cow position: | chrX:29045329-29044835 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 42 |
| Conread position: | 33-386 |
| Cow position: | chrX:29045807-29045454 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-511 |
| Cow position: | chrX:25309660-25310136 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 25 |
| Conread position: | 77-509 |
| Cow position: | chrX:29045361-29044932 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 29 |
| Conread position: | 84-511 |
| Cow position: | chrX:29045840-29045413 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-471 |
| Cow position: | chrX:13826924-13826574 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 43, 52 |
| Conread position: | 192-520 |
| Cow position: | chrX:29045333-29045003 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 40, 46 |
Show alignments to all cow chromosomes.