Cow genome map
| Conread name: | Ss1.1-rebs12c_l2.5 |
| Conread position: | 191-435 |
| Cow position: | chr27:25873889-25873654 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 191-501 |
| Cow position: | chr27:27501477-27501172 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 192-429 |
| Cow position: | chr27:17864258-17864031 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 69 |
| Conread position: | 192-486 |
| Cow position: | chr27:8297406-8297706 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 11, 75 |
| Conread position: | 192-500 |
| Cow position: | chr27:28895268-28894949 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 227 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 126, 39 |
| Conread position: | 195-502 |
| Cow position: | chr27:17422849-17422530 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 195-504 |
| Cow position: | chr27:17568365-17568040 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 234 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 121, 36 |
| Conread position: | 196-428 |
| Cow position: | chr27:19975676-19975431 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 31, 42 |
| Conread position: | 196-486 |
| Cow position: | chr27:23515991-23515696 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 75, 43 |
| Conread position: | 196-501 |
| Cow position: | chr27:8726844-8726521 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 228 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 196-501 |
| Cow position: | chr27:25964696-25965016 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 116, 41 |
| Conread position: | 196-504 |
| Cow position: | chr27:3751507-3751178 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 73, 11 |
| Conread position: | 197-435 |
| Cow position: | chr27:18954307-18954059 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 7, 38 |
| Conread position: | 209-405 |
| Cow position: | chr27:27822793-27822993 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 101, 19 |
| Conread position: | 220-429 |
| Cow position: | chr27:9989963-9990178 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 16, 9 |
| Conread position: | 220-504 |
| Cow position: | chr27:3232294-3232597 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 224-504 |
| Cow position: | chr27:29036145-29036432 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 95, 7 |
| Conread position: | 225-504 |
| Cow position: | chr27:25971365-25971663 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 246 |
| Conread position: | 234-503 |
| Cow position: | chr27:9254916-9255201 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 82, 142 |
| Conread position: | 235-492 |
| Cow position: | chr27:1081937-1082213 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 235-492 |
| Cow position: | chr27:4331515-4331791 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 235-492 |
| Cow position: | chr27:5914158-5913887 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 71, 141 |
| Conread position: | 235-492 |
| Cow position: | chr27:21284010-21284280 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 84, 25 |
| Conread position: | 235-492 |
| Cow position: | chr27:26330157-26329882 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 81, 114 |
| Conread position: | 235-500 |
| Cow position: | chr27:25800980-25801264 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 235-501 |
| Cow position: | chr27:2001070-2000785 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 84, 42 |
| Conread position: | 235-501 |
| Cow position: | chr27:16031172-16031457 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 235-504 |
| Cow position: | chr27:165694-165983 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 235-504 |
| Cow position: | chr27:1520905-1520617 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 51, 42 |
| Conread position: | 235-504 |
| Cow position: | chr27:2557764-2558054 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 18, 149 |
| Conread position: | 235-504 |
| Cow position: | chr27:4768660-4768372 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 235-504 |
| Cow position: | chr27:4982597-4982309 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 235-504 |
| Cow position: | chr27:5925498-5925210 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 81, 141 |
| Conread position: | 235-504 |
| Cow position: | chr27:5983805-5984093 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 38 |
| Conread position: | 235-504 |
| Cow position: | chr27:10579172-10578883 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 47, 54 |
| Conread position: | 235-504 |
| Cow position: | chr27:13308869-13308581 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 235-504 |
| Cow position: | chr27:15544240-15543952 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 235-504 |
| Cow position: | chr27:15634117-15634397 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 81, 206 |
| Conread position: | 235-504 |
| Cow position: | chr27:19523483-19523771 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 81, 242 |
| Conread position: | 235-504 |
| Cow position: | chr27:20810646-20810358 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 235-504 |
| Cow position: | chr27:22797432-22797720 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 235-504 |
| Cow position: | chr27:24296044-24296330 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 235-504 |
| Cow position: | chr27:27045402-27045120 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 235-504 |
| Cow position: | chr27:27291614-27291327 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 235-504 |
| Cow position: | chr27:27849495-27849207 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 51, 42 |
| Conread position: | 235-504 |
| Cow position: | chr27:29811552-29811268 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 84, 146 |
| Conread position: | 236-478 |
| Cow position: | chr27:19932342-19932598 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 236-487 |
| Cow position: | chr27:18473465-18473212 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 17 |
| Conread position: | 237-486 |
| Cow position: | chr27:27193140-27193409 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 237-504 |
| Cow position: | chr27:13353529-13353243 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 237-504 |
| Cow position: | chr27:15375037-15374760 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 79, 112 |
| Conread position: | 239-485 |
| Cow position: | chr27:16427884-16427620 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 239-504 |
| Cow position: | chr27:8201159-8200875 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 240-482 |
| Cow position: | chr27:3994089-3994345 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 241-460 |
| Cow position: | chr27:31268435-31268202 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 69, 99 |
| Conread position: | 241-504 |
| Cow position: | chr27:21203989-21204270 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 72, 156 |
| Conread position: | 242-504 |
| Cow position: | chr27:3760086-3759808 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 74, 116 |
| Conread position: | 247-492 |
| Cow position: | chr27:15405841-15405598 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 71, 94 |
| Conread position: | 263-504 |
| Cow position: | chr27:8959832-8960092 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 295-504 |
| Cow position: | chr27:15925767-15925982 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 137, 19 |
| Conread position: | 302-485 |
| Cow position: | chr27:27556951-27556765 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 115, 11 |
| Conread position: | 319-501 |
| Cow position: | chr27:12146514-12146703 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 319-504 |
| Cow position: | chr27:13901023-13900831 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 322-504 |
| Cow position: | chr27:21342654-21342466 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 325-504 |
| Cow position: | chr27:23074827-23075009 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 108, 52 |
Show alignments to all cow chromosomes.