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Cow genome map

           
Conread name:
           
Ss1.1-rebs12c_l2.5
        

               
Conread position:
               
181-500
               

               
Cow position:
               
chr5:14631150-14631486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
55, 44
               

               
Conread position:
               
182-504
               

               
Cow position:
               
chr5:9235294-9235630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
131, 9
               

               
Conread position:
               
183-492
               

               
Cow position:
               
chr5:34669976-34670301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
141, 41
               

               
Conread position:
               
188-500
               

               
Cow position:
               
chr5:37424835-37424503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
37, 50
               

               
Conread position:
               
189-501
               

               
Cow position:
               
chr5:57363688-57364005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
41, 58
               

               
Conread position:
               
190-415
               

               
Cow position:
               
chr5:70607417-70607182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
13, 39
               

               
Conread position:
               
190-504
               

               
Cow position:
               
chr5:47697100-47697421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
45, 34
               

               
Conread position:
               
191-486
               

               
Cow position:
               
chr5:52605521-52605831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
45, 15
               

               
Conread position:
               
191-487
               

               
Cow position:
               
chr5:12502061-12502372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
79, 55
               

               
Conread position:
               
191-501
               

               
Cow position:
               
chr5:23754246-23754566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
120, 34
               

               
Conread position:
               
191-504
               

               
Cow position:
               
chr5:59771153-59770820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
60, 33
               

               
Conread position:
               
192-437
               

               
Cow position:
               
chr5:51818682-51818439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
95, 61
               

               
Conread position:
               
192-457
               

               
Cow position:
               
chr5:16909787-16910049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
67, 39
               

               
Conread position:
               
192-473
               

               
Cow position:
               
chr5:46470640-46470937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
89, 77
               

               
Conread position:
               
192-482
               

               
Cow position:
               
chr5:32164822-32165122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
45, 20
               

               
Conread position:
               
192-486
               

               
Cow position:
               
chr5:26058224-26057923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 39
               

               
Conread position:
               
192-492
               

               
Cow position:
               
chr5:63312415-63312732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
192-499
               

               
Cow position:
               
chr5:28331520-28331840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
121, 195
               

               
Conread position:
               
192-500
               

               
Cow position:
               
chr5:50201892-50202219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
69, 87
               

               
Conread position:
               
195-435
               

               
Cow position:
               
chr5:29674310-29674072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
74, 36
               

               
Conread position:
               
195-482
               

               
Cow position:
               
chr5:34196660-34196365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
83, 44
               

               
Conread position:
               
195-486
               

               
Cow position:
               
chr5:13702157-13701863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
119, 182
               

               
Conread position:
               
195-486
               

               
Cow position:
               
chr5:61330235-61330544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
81, 36
               

               
Conread position:
               
195-504
               

               
Cow position:
               
chr5:41575404-41575092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
118, 185
               

               
Conread position:
               
196-436
               

               
Cow position:
               
chr5:49912104-49911857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
51, 188
               

               
Conread position:
               
196-461
               

               
Cow position:
               
chr5:51069306-51069029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
120, 192
               

               
Conread position:
               
196-472
               

               
Cow position:
               
chr5:62759038-62759331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
86, 43
               

               
Conread position:
               
196-485
               

               
Cow position:
               
chr5:21921169-21920867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
69, 64
               

               
Conread position:
               
196-486
               

               
Cow position:
               
chr5:21785313-21785615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
196-500
               

               
Cow position:
               
chr5:29459014-29458700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
40, 7
               

               
Conread position:
               
196-500
               

               
Cow position:
               
chr5:58012706-58013026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
112, 41
               

               
Conread position:
               
196-501
               

               
Cow position:
               
chr5:27173808-27173499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
29, 7
               

               
Conread position:
               
197-504
               

               
Cow position:
               
chr5:58192017-58191690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
28, 41
               

               
Conread position:
               
198-373
               

               
Cow position:
               
chr5:21557490-21557663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
44, 21
               

               
Conread position:
               
198-479
               

               
Cow position:
               
chr5:4042108-4042391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
233, 121
               

               
Conread position:
               
199-422
               

               
Cow position:
               
chr5:38268623-38268391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
112, 73
               

               
Conread position:
               
199-473
               

               
Cow position:
               
chr5:64958681-64958967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
27, 41
               

               
Conread position:
               
199-486
               

               
Cow position:
               
chr5:32814898-32814605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
77, 225
               

               
Conread position:
               
199-486
               

               
Cow position:
               
chr5:45284522-45284814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
35, 24
               

               
Conread position:
               
199-501
               

               
Cow position:
               
chr5:14782133-14782447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
111, 5
               

               
Conread position:
               
199-504
               

               
Cow position:
               
chr5:30360358-30360667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
117, 30
               

               
Conread position:
               
202-486
               

               
Cow position:
               
chr5:42745860-42745563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
78, 11
               

               
Conread position:
               
203-504
               

               
Cow position:
               
chr5:11956403-11956711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
116, 81
               

               
Conread position:
               
205-500
               

               
Cow position:
               
chr5:11631894-11632208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
20, 33
               

               
Conread position:
               
211-408
               

               
Cow position:
               
chr5:5664329-5664531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
28, 60
               

               
Conread position:
               
218-504
               

               
Cow position:
               
chr5:58770793-58771096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
98, 11
               

               
Conread position:
               
219-504
               

               
Cow position:
               
chr5:46685539-46685837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
99, 18
               

               
Conread position:
               
219-504
               

               
Cow position:
               
chr5:72856951-72856647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
9, 5
               

               
Conread position:
               
220-504
               

               
Cow position:
               
chr5:18558327-18558629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
15, 9
               

               
Conread position:
               
220-504
               

               
Cow position:
               
chr5:37609865-37610168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
5, 19
               

               
Conread position:
               
224-504
               

               
Cow position:
               
chr5:38662403-38662105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
95, 13
               

               
Conread position:
               
224-504
               

               
Cow position:
               
chr5:48026341-48026043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
92, 121
               

               
Conread position:
               
227-504
               

               
Cow position:
               
chr5:3695422-3695137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
83, 116
               

               
Conread position:
               
230-504
               

               
Cow position:
               
chr5:52823141-52823433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
86, 115
               

               
Conread position:
               
231-504
               

               
Cow position:
               
chr5:38378717-38378997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
52, 45
               

               
Conread position:
               
231-504
               

               
Cow position:
               
chr5:40791901-40791614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
83, 174
               

               
Conread position:
               
234-504
               

               
Cow position:
               
chr5:3501066-3501354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
81, 242
               

               
Conread position:
               
235-454
               

               
Cow position:
               
chr5:39216176-39216409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
235-458
               

               
Cow position:
               
chr5:55631125-55630884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
235-470
               

               
Cow position:
               
chr5:20107966-20108219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
235-473
               

               
Cow position:
               
chr5:1059506-1059762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
235-473
               

               
Cow position:
               
chr5:24577497-24577241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
235-480
               

               
Cow position:
               
chr5:28571609-28571346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
235-486
               

               
Cow position:
               
chr5:41954230-41954493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
76, 109
               

               
Conread position:
               
235-487
               

               
Cow position:
               
chr5:41228986-41229255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
235-490
               

               
Cow position:
               
chr5:7396309-7396037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
84, 243
               

               
Conread position:
               
235-497
               

               
Cow position:
               
chr5:30294368-30294099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
84, 13
               

               
Conread position:
               
235-499
               

               
Cow position:
               
chr5:54786047-54786330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
235-500
               

               
Cow position:
               
chr5:49521765-49521487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
235-500
               

               
Cow position:
               
chr5:64778941-64779230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
235-501
               

               
Cow position:
               
chr5:10840408-10840693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
235-501
               

               
Cow position:
               
chr5:16127105-16126822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
71, 20
               

               
Conread position:
               
235-501
               

               
Cow position:
               
chr5:18250114-18249835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
235-501
               

               
Cow position:
               
chr5:24299074-24298789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
81, 188
               

               
Conread position:
               
235-501
               

               
Cow position:
               
chr5:32755383-32755667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
81, 263
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:295326-295038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:443248-443536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
84, 183
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:710090-710378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:1338860-1339149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:2203330-2203618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
51, 42
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:2917523-2917237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
81, 62
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:2976847-2976559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:3789289-3789001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:3970586-3970298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
47, 51
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:4434443-4434731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:5106285-5105998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:6125101-6125389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
84, 146
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:6151771-6152059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:6455602-6455890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:6615232-6615519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
81, 188
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:9003049-9003337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:10066489-10066777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:10299529-10299241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:10921906-10921617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:11358187-11357899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
84, 141
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:12729099-12729364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
197, 76
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:14636517-14636805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:15761309-15761596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:18118914-18119202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:19978853-19979142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
81, 241
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:21189282-21188994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:23957265-23957553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:24101711-24101423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:24632978-24633266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:29256151-29256438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:30582387-30582108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:31709361-31709073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:35446557-35446843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
81, 47
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:37380148-37379862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
84, 213
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:38848524-38848812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:42283231-42282943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:45180026-45180315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:46667135-46666847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
84, 183
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:46735215-46735503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:46779577-46779289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:46817041-46817329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:47361277-47360992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
81, 134
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:47560500-47560788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:48805390-48805677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
80, 175
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:50675526-50675814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
51, 42
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:51166248-51166534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
81, 161
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:51746285-51745996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:54136577-54136865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:54362359-54362071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
51, 42
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:54927858-54928146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:54930186-54930474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:56931785-56932043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:57920979-57920694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
75, 16
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:57983782-57984068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
65, 134
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:59064505-59064218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 54
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr5:66910165-66909877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
51, 42
               

               
Conread position:
               
236-427
               

               
Cow position:
               
chr5:40347060-40347263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
236-503
               

               
Cow position:
               
chr5:58004296-58004011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
80, 160
               

               
Conread position:
               
236-504
               

               
Cow position:
               
chr5:4015812-4016094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
83, 149
               

               
Conread position:
               
236-504
               

               
Cow position:
               
chr5:8479348-8479064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
80, 31
               

               
Conread position:
               
236-504
               

               
Cow position:
               
chr5:12921458-12921172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
80, 220
               

               
Conread position:
               
236-504
               

               
Cow position:
               
chr5:29742497-29742783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
80, 254
               

               
Conread position:
               
236-504
               

               
Cow position:
               
chr5:31120145-31120433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
237-486
               

               
Cow position:
               
chr5:7276891-7276626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
237-487
               

               
Cow position:
               
chr5:17027136-17026867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
79, 64
               

               
Conread position:
               
237-504
               

               
Cow position:
               
chr5:33775709-33775994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
237-504
               

               
Cow position:
               
chr5:37735435-37735148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
237-504
               

               
Cow position:
               
chr5:42507817-42507533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
237-504
               

               
Cow position:
               
chr5:59146436-59146150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
82, 181
               

               
Conread position:
               
238-504
               

               
Cow position:
               
chr5:62436181-62435899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
73, 138
               

               
Conread position:
               
239-491
               

               
Cow position:
               
chr5:73485842-73486112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
79, 184
               

               
Conread position:
               
239-500
               

               
Cow position:
               
chr5:10853775-10854050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
61, 231
               

               
Conread position:
               
239-501
               

               
Cow position:
               
chr5:9091364-9091642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
239-501
               

               
Cow position:
               
chr5:64845208-64845485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 160
               

               
Conread position:
               
239-504
               

               
Cow position:
               
chr5:5716018-5716280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
132, 77
               

               
Conread position:
               
239-504
               

               
Cow position:
               
chr5:6772625-6772341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
239-504
               

               
Cow position:
               
chr5:41067082-41066798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
240-504
               

               
Cow position:
               
chr5:41952036-41952301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
124, 27
               

               
Conread position:
               
241-486
               

               
Cow position:
               
chr5:34299947-34299682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
241-499
               

               
Cow position:
               
chr5:26348436-26348712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
71, 159
               

               
Conread position:
               
241-500
               

               
Cow position:
               
chr5:30844882-30844606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
242-487
               

               
Cow position:
               
chr5:26120483-26120227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
72, 141
               

               
Conread position:
               
246-504
               

               
Cow position:
               
chr5:14905001-14905278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
246-504
               

               
Cow position:
               
chr5:61231763-61232037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
68, 134
               

               
Conread position:
               
247-492
               

               
Cow position:
               
chr5:7582256-7582497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
67, 115
               

               
Conread position:
               
249-504
               

               
Cow position:
               
chr5:5924922-5925186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
255-500
               

               
Cow position:
               
chr5:3627774-3628035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
294-504
               

               
Cow position:
               
chr5:44709393-44709606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
146, 18
               

               
Conread position:
               
310-504
               

               
Cow position:
               
chr5:18119504-18119705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
312-484
               

               
Cow position:
               
chr5:26403943-26404114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
120, 139
               

               
Conread position:
               
313-436
               

               
Cow position:
               
chr5:41557878-41558001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
313-501
               

               
Cow position:
               
chr5:63200269-63200074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
47, 99
               

               
Conread position:
               
314-486
               

               
Cow position:
               
chr5:68591791-68591613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
314-504
               

               
Cow position:
               
chr5:12679612-12679807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
103, 92
               

               
Conread position:
               
316-501
               

               
Cow position:
               
chr5:38286253-38286061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
317-504
               

               
Cow position:
               
chr5:6735661-6735855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
317-504
               

               
Cow position:
               
chr5:49970806-49970612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
317-504
               

               
Cow position:
               
chr5:54694836-54695028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
317-504
               

               
Cow position:
               
chr5:57614224-57614418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
319-504
               

               
Cow position:
               
chr5:1640826-1641018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
319-504
               

               
Cow position:
               
chr5:57336448-57336640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
322-501
               

               
Cow position:
               
chr5:4754766-4754951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
322-504
               

               
Cow position:
               
chr5:45703022-45702832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
322-504
               

               
Cow position:
               
chr5:58243834-58244022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
110, 164
               

               
Conread position:
               
324-470
               

               
Cow position:
               
chr5:32365689-32365540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
324-501
               

               
Cow position:
               
chr5:37083913-37084097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
325-500
               

               
Cow position:
               
chr5:15723368-15723547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
327-504
               

               
Cow position:
               
chr5:8178065-8177882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
105, 138
               
Show alignments to all cow chromosomes.