Cow genome map
| Conread name: | Ss1.1-rece22c_a22.5 |
| Conread position: | 1-293 |
| Cow position: | chr17:22498743-22498460 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 92, 98 |
| Conread position: | 1-369 |
| Cow position: | chr17:22552032-22551664 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 236 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 61, 71 |
| Conread position: | 1-371 |
| Cow position: | chr17:22552536-22552166 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 157 |
| Conread position: | 1-374 |
| Cow position: | chr17:22498911-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-375 |
| Cow position: | chr17:22499331-22498957 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 315 |
| Conread position: | 1-375 |
| Cow position: | chr17:22551864-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 82, 64 |
| Conread position: | 1-375 |
| Cow position: | chr17:22589618-22589244 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 138, 146 |
| Conread position: | 1-375 |
| Cow position: | chr17:22589954-22589580 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 254 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 63, 71 |
| Conread position: | 1-377 |
| Cow position: | chr17:22552956-22552580 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 316 |
| Conread position: | 1-378 |
| Cow position: | chr17:22452401-22452024 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 151 |
| Conread position: | 1-378 |
| Cow position: | chr17:22552116-22551739 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-384 |
| Cow position: | chr17:22473398-22473781 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 93, 99 |
| Conread position: | 1-384 |
| Cow position: | chr17:22499079-22498696 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-384 |
| Cow position: | chr17:22499163-22498780 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-384 |
| Cow position: | chr17:22499247-22498864 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 92 |
| Conread position: | 1-384 |
| Cow position: | chr17:22552368-22551985 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 99 |
| Conread position: | 1-384 |
| Cow position: | chr17:22552620-22552237 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 252 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 85, 62 |
| Conread position: | 1-384 |
| Cow position: | chr17:22553040-22552657 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 251 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 90, 99 |
| Conread position: | 1-384 |
| Cow position: | chr17:22590206-22589823 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 248 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 137, 153 |
| Conread position: | 2-229 |
| Cow position: | chr17:22473735-22473963 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 91, 97 |
| Conread position: | 2-289 |
| Cow position: | chr17:22451896-22451609 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-375 |
| Cow position: | chr17:22452316-22451943 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 98 |
| Conread position: | 2-375 |
| Cow position: | chr17:22552283-22551910 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-375 |
| Cow position: | chr17:22552703-22552330 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 330, 336 |
| Conread position: | 2-375 |
| Cow position: | chr17:22589701-22589328 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 92, 98 |
| Conread position: | 2-375 |
| Cow position: | chr17:22590037-22589664 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 239 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-375 |
| Cow position: | chr17:22590121-22589748 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 70 |
| Conread position: | 2-376 |
| Cow position: | chr17:22452232-22451858 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 98 |
| Conread position: | 2-377 |
| Cow position: | chr17:22589869-22589494 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 322, 315 |
| Conread position: | 2-384 |
| Cow position: | chr17:22452064-22451682 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 230 |
| Conread position: | 2-384 |
| Cow position: | chr17:22452148-22451766 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 90 |
| Conread position: | 2-384 |
| Cow position: | chr17:22473483-22473865 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 147 |
| Conread position: | 2-384 |
| Cow position: | chr17:22551947-22551565 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 251 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 92, 98 |
| Conread position: | 2-384 |
| Cow position: | chr17:22552199-22551817 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 2-384 |
| Cow position: | chr17:22552451-22552069 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-384 |
| Cow position: | chr17:22552871-22552489 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 251 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 60, 70 |
| Conread position: | 2-384 |
| Cow position: | chr17:22590289-22589907 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 90 |
| Conread position: | 3-384 |
| Cow position: | chr17:22553122-22552741 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 96, 90 |
| Conread position: | 6-384 |
| Cow position: | chr17:22473571-22473950 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 0 |
| Conread position: | 16-376 |
| Cow position: | chr17:22473248-22473605 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 242 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 68, 15 |
| Conread position: | 17-384 |
| Cow position: | chr17:22498979-22498612 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 245 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 223, 216 |
| Conread position: | 17-384 |
| Cow position: | chr17:22552772-22552405 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-384 |
| Cow position: | chr17:22589770-22589403 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 49, 58 |
| Conread position: | 18-384 |
| Cow position: | chr17:22499398-22499032 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 82 |
| Conread position: | 21-375 |
| Cow position: | chr17:22473334-22473688 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 37 |
| Conread position: | 73-384 |
| Cow position: | chr17:22452413-22452102 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 81-384 |
| Cow position: | chr17:22499419-22499116 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 207 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-384 |
| Cow position: | chr17:22473244-22473529 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 5, 0 |
Show alignments to all cow chromosomes.