Cow genome map
| Conread name: | Ss1.1-rece22c_a22.5 |
| Conread position: | 1-248 |
| Cow position: | chr23:24522421-24522174 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 96, 91 |
| Conread position: | 1-298 |
| Cow position: | chr23:24626455-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 206 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 155, 147 |
| Conread position: | 1-319 |
| Cow position: | chr23:24535730-24535411 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 146, 156 |
| Conread position: | 1-335 |
| Cow position: | chr23:24654180-24654507 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 155, 146 |
| Conread position: | 1-344 |
| Cow position: | chr23:25626678-25627021 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 139, 166 |
| Conread position: | 1-346 |
| Cow position: | chr23:25698425-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 102, 117 |
| Conread position: | 1-351 |
| Cow position: | chr23:24547015-24546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 65 |
| Conread position: | 1-351 |
| Cow position: | chr23:25698677-25698327 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 139, 146 |
| Conread position: | 1-364 |
| Cow position: | chr23:24560491-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-375 |
| Cow position: | chr23:25626093-25626467 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-376 |
| Cow position: | chr23:24522670-24522298 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-376 |
| Cow position: | chr23:24547099-24546724 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 65 |
| Conread position: | 1-376 |
| Cow position: | chr23:24639531-24639906 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 150 |
| Conread position: | 1-376 |
| Cow position: | chr23:24639699-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-376 |
| Cow position: | chr23:25626261-25626633 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 250 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 66, 84 |
| Conread position: | 1-376 |
| Cow position: | chr23:25660298-25660673 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 250 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 94, 88 |
| Conread position: | 1-377 |
| Cow position: | chr23:25698593-25698217 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 256 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 96, 91 |
| Conread position: | 1-378 |
| Cow position: | chr23:24639279-24639656 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 243 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 102, 110 |
| Conread position: | 1-379 |
| Cow position: | chr23:24535898-24535520 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 316 |
| Conread position: | 1-384 |
| Cow position: | chr23:24547267-24546884 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-384 |
| Cow position: | chr23:25626009-25626392 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-384 |
| Cow position: | chr23:25698509-25698126 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 252 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 190, 201 |
| Conread position: | 2-267 |
| Cow position: | chr23:25723979-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 92, 98 |
| Conread position: | 2-289 |
| Cow position: | chr23:25660467-25660755 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 285, 0 |
| Conread position: | 2-345 |
| Cow position: | chr23:24535813-24535470 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-375 |
| Cow position: | chr23:25660215-25660588 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 157 |
| Conread position: | 2-376 |
| Cow position: | chr23:24547182-24546808 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 64 |
| Conread position: | 2-376 |
| Cow position: | chr23:24639448-24639822 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-378 |
| Cow position: | chr23:24560574-24560198 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 148 |
| Conread position: | 2-378 |
| Cow position: | chr23:24626372-24626746 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 301 |
| Conread position: | 2-378 |
| Cow position: | chr23:24639364-24639740 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 23 |
| Conread position: | 2-378 |
| Cow position: | chr23:25626595-25626971 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 231 |
| Conread position: | 2-384 |
| Cow position: | chr23:24560658-24560276 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-374 |
| Cow position: | chr23:25724058-25723692 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 145 |
| Conread position: | 7-376 |
| Cow position: | chr23:24560821-24560452 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-384 |
| Cow position: | chr23:24535976-24535599 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-375 |
| Cow position: | chr23:24626298-24626661 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 144 |
| Conread position: | 17-290 |
| Cow position: | chr23:24654112-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 74, 80 |
| Conread position: | 17-365 |
| Cow position: | chr23:25660398-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-384 |
| Cow position: | chr23:25626193-25626560 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 50, 61 |
| Conread position: | 23-376 |
| Cow position: | chr23:24547329-24546976 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-384 |
| Cow position: | chr23:24522567-24522206 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 42 |
| Conread position: | 23-384 |
| Cow position: | chr23:25626535-25626893 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 51 |
| Conread position: | 24-384 |
| Cow position: | chr23:25625950-25626308 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 28-311 |
| Cow position: | chr23:24521972-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 111, 118 |
| Conread position: | 31-374 |
| Cow position: | chr23:24654042-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 58 |
| Conread position: | 37-378 |
| Cow position: | chr23:24536030-24535689 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 52 |
| Conread position: | 37-384 |
| Cow position: | chr23:25660166-25660513 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-378 |
| Cow position: | chr23:24560874-24560534 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 45-378 |
| Cow position: | chr23:25724104-25723771 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 227 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 52, 44 |
| Conread position: | 77-384 |
| Cow position: | chr23:24626279-24626586 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 25 |
| Conread position: | 96-378 |
| Cow position: | chr23:24639290-24639572 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 215, 229 |
| Conread position: | 101-376 |
| Cow position: | chr23:25660146-25660421 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 216, 229 |
| Conread position: | 107-384 |
| Cow position: | chr23:24560889-24560612 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 112-346 |
| Cow position: | chr23:24521972-24521737 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 115-376 |
| Cow position: | chr23:24654042-24654303 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 116-378 |
| Cow position: | chr23:24639226-24639488 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 155, 163 |
| Conread position: | 117-376 |
| Cow position: | chr23:25724116-25723857 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-384 |
| Cow position: | chr23:24547315-24547052 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 169-384 |
| Cow position: | chr23:25698677-25698462 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 62, 71 |
| Conread position: | 191-378 |
| Cow position: | chr23:24547329-24547142 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 193-384 |
| Cow position: | chr23:24536042-24535851 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 196-378 |
| Cow position: | chr23:24521972-24521790 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 199-384 |
| Cow position: | chr23:24654042-24654227 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 204-384 |
| Cow position: | chr23:25660165-25660345 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 212-384 |
| Cow position: | chr23:25724105-25723933 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 127, 122 |
Show alignments to all cow chromosomes.